Reliability of transcriptional cycles and the yeast cell-cycle oscillator.

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2010

Authors

Sevim, Volkan
Gong, Xinwei
Socolar, Joshua ES

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Abstract

A recently published transcriptional oscillator associated with the yeast cell cycle provides clues and raises questions about the mechanisms underlying autonomous cyclic processes in cells. Unlike other biological and synthetic oscillatory networks in the literature, this one does not seem to rely on a constitutive signal or positive auto-regulation, but rather to operate through stable transmission of a pulse on a slow positive feedback loop that determines its period. We construct a continuous-time Boolean model of this network, which permits the modeling of noise through small fluctuations in the timing of events, and show that it can sustain stable oscillations. Analysis of simpler network models shows how a few building blocks can be arranged to provide stability against fluctuations. Our findings suggest that the transcriptional oscillator in yeast belongs to a new class of biological oscillators.

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Published Version (Please cite this version)

10.1371/journal.pcbi.1000842

Publication Info

Sevim, Volkan, Xinwei Gong and Joshua ES Socolar (2010). Reliability of transcriptional cycles and the yeast cell-cycle oscillator. PLoS computational biology, 6(7). p. e1000842. 10.1371/journal.pcbi.1000842 Retrieved from https://hdl.handle.net/10161/4452.

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Scholars@Duke

Socolar

Joshua Socolar

Professor of Physics

Prof. Socolar is interested in collective behavior in condensed matter and dynamical systems. His current research interests include:

  • Limit-periodic structures, quasicrystals, packing problems, and tiling theory;
  • Self-assembly and phases of designed colloidal particles;
  • Shear jamming and stick-slip behavior in dry granular materials;
  • Organization and dynamics of complex networks;
  • Topological elasticity of mechanical lattices.

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