Browsing by Author "Clark, Robert L"
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Item Open Access A method for atomic force microscopy cantilever stiffness calibration under heavy fluid loading(2009) Kennedy, Scott J; Cole, Daniel G; Clark, Robert LThis work presents a method for force calibration of rectangular atomic force microscopy (AFM) microcantilevers under heavy fluid loading. Theoretical modeling of the thermal response of microcantilevers is discussed including a fluid-structure interaction model of the cantilever-fluid system that incorporates the results of the fluctuation-dissipation theorem. This model is curve fit to the measured thermal response of a cantilever in de-ionized water and a cost function is used to quantify the difference between the theoretical model and measured data. The curve fit is performed in a way that restricts the search space to parameters that reflect heavy fluid loading conditions. The resulting fitting parameters are used to calibrate the cantilever. For comparison, cantilevers are calibrated using Sader's method in air and the thermal noise method in both air and water. For a set of eight cantilevers ranging in stiffness from 0.050 to 5.8 N/m, the maximum difference between Sader's calibration performed in air and the new method performed in water was 9.4%. A set of three cantilevers that violate the aspect ratio assumption associated with the fluid loading model (length-to-width ratios less than 3.5) ranged in stiffness from 0.85 to 4.7 N/m and yielded differences as high as 17.8%. (C) 2009 American Institute of Physics. [doi:10.1063/1.3263907]Item Open Access A versatile diffractive maskless lithography for single-shot and serial microfabrication.(Opt Express, 2010-05-24) Jenness, Nathan J; Hill, Ryan T; Hucknall, Angus; Chilkoti, Ashutosh; Clark, Robert LWe demonstrate a diffractive maskless lithographic system that is capable of rapidly performing both serial and single-shot micropatterning. Utilizing the diffractive properties of phase holograms displayed on a spatial light modulator, arbitrary intensity distributions were produced to form two and three dimensional micropatterns/structures in a variety of substrates. A straightforward graphical user interface was implemented to allow users to load templates and change patterning modes within the span of a few minutes. A minimum resolution of approximately 700 nm is demonstrated for both patterning modes, which compares favorably to the 232 nm resolution limit predicted by the Rayleigh criterion. The presented method is rapid and adaptable, allowing for the parallel fabrication of microstructures in photoresist as well as the fabrication of protein microstructures that retain functional activity.Item Open Access Adaptive Control of an Optical Trap for Single Molecule and Motor Protein Research(2007-12-13) Wulff, Kurt DThis research presents the development of an advanced, state-of-the-art optical trap for use in biological materials and nanosystems investigation. An optical trap is an instrument capable of manipulating microscopic particles using the inherent momentum of light. First introduced by Askin et al., the single beam gradient optical trap is capable of generating small forces (~1-100 pN) in a noninvasive manner. As a result, the optical trap is often used to manipulate biological specimen. This research presents the process for the construction of a custom optical trap, the methods to build a controllable optical trap through a traditional fixed gain controller as well as an adaptive controller, and also enables the application of torque to trapped particles. A method of using adaptive techniques for system identification and calibration is also presented. This research has the potential to use forces and torques to affect our understanding of the mechanics of single molecules and motor proteins. This instrument provides a more precise means of manipulating biological specimen as well as a tool for nanofabrication and has the potential to expand the knowledge base of DNA, chromosomes, biomotors, motor proteins, reversible polymers, and can be used to control chemical reactions. The research presented here documents the creation of an optical trap that is sensitive for applications requiring precise displacements and forces, adaptable to a variety of current and future research applications, and useable by anyone interested in researching micro- and nanosytems.Item Open Access Delivering Electrical and Mechanical Stimuli through Bioactive Fibers for Stem Cell Tissue Engineering(2009) Carnell, Lisa Ann ScottRegenerative medicine holds the promise of providing relief for people suffering from diseases where treatment has been unattainable. The research is advancing rapidly; however, there are still many hurdles to overcome before the therapeutic potential of regenerative medicine and cell therapy can be realized. Low in frequency in all tissues, stem cell number is often a limiting factor. Approaches that can control the proliferation and direct the differentiation of stem cells would significantly impact the field. Developing an adequate environment that mimics in vivo conditions is an intensively studied topic for this purpose. Collaboratively, researchers have come close to incorporating nearly all biological cues representative of the human body. Arguably the most overlooked aspect is the influence of electrical stimulation. In this dissertation, we examined polyvinylidene fluoride (PVDF) as a new biomaterial and developed a 3D scaffold capable of providing mechanical and electrical stimuli to cells in vitro.
The fabrication of a 3D scaffold was performed using electrospinning. To obtain highly aligned fibers and scaffolds with controlled porosity, the set-up was modified by incorporating an auxiliary electrode to focus the electric field. Highly aligned fibers with diameters ranging from 500 nm to 15 µm were fabricated from colorless polyimide (CP2) and polyglycolic acid (PGA) and used to construct multilayer scaffolds. This experimental set-up was used to electrospin α-phase PVDF into the polar β-phase. We demonstrated the transition to the β-phase by examining the crystalline structure using x-ray diffraction (XRD), differential scanning calorimetry (DSC), fourier transform infrared spectroscopy (FTIR) and polarized light optical microscopy (PLOM). We confirmed these results by observing a polarization peak at 80°C using the thermally stimulated current (TSC) method. Our results proved the electrospinning process used in our investigation poled the PVDF polymer in situ.
TThe influence of architecture and topographical cues was examined on 3D scaffolds and films of CP2 polyimide and PVDF. Culture of human mesenchymal stem cells (hMSCs) for 7 and 14 days demonstrated a significant difference in gene expression. The fibers upregulated the neuronal marker microtubule associated protein (MAP2), while downregulation of this protein was observed on films. Gap junction formation was observed by the expression of connexin-43 after 7 days on PVDF films attributed to its inherent pyroelectric properties. Connexin-43 expression on fibers showed cell-cell contact across the fibers indicating good communication in our 3D scaffold.
A scaffold platform was designed using PVDF fibers that allowed us to apply electrical stimulation to the cells through the fibers. The electrically stimulated PVDF fibers resulted in enhanced proliferation compared to TCPS as evidenced by a 10% increase in the uptake of EdU. Protein expression revealed upregulation of neuronal marker MAP2. Our findings indicate this new platform capable of delivering mechanical, electrical, topographical and biochemical stimuli during in vitro culture holds promise for the advancement of stem cell differentiation and tissue engineering.
Item Open Access Development of a State-of-the-Art Atomic Force Microscope for Improved Force Spectroscopy(2008-11-19) Rivera, MonicaThis research describes the development of a state-of-the-art atomic force microscope (AFM) for improved force spectroscopy. Although the AFM has been used extensively in this field of research, the performance of the instrument has been limited by inefficient operation techniques, incorrect experimental assumptions, and inadequate controller design. This research focuses on overcoming these deficiencies by providing precise control over the instrument for specialized research in a manner that is conducive to the natural science researcher.
To facilitate this research, a custom, multi-axis AFM system was constructed. The instrument was designed primarily for AFM-based force spectroscopy and as a result a substantial amount of research focused on the development of a wide variety of approach/retraction methods for the instrument. Defining research in this area included the development of methods to minimize potentially damaging compressive forces, form polymer bridges at different tip-sample gap widths, produce clean, deconvoluted force-extension curves, and limit single molecule force spectroscopy pulling geometry errors. In an effort to increase the efficiency of the instrument, the programs developed during this research were fully automated, allowing autonomous operation of the instrument for long periods of time. To compliment the data collection programs, both manual and automated analysis programs with force-volume imaging capabilities were also developed.
By studying the AFM from a dynamic systems, measurements, and controls approach, the resulting controllers were tailored to meet the process requirements of the intended applications. In doing so, the sensitivity of the instrument was improved for applications of interest. By incorporating control over the environment, contact force, loading rate, and pulling angle, the research has increased the accuracy of the AFM such that molecules and receptor-ligand binding events can be investigated with greater detail. Furthermore, the incorporation of a graphical user interface and automated data collection and analysis tools has made the AFM a more user-friendly, efficient instrument for the natural science researcher.
Item Open Access Electrosprayed core-shell microspheres for protein delivery.(Chem Commun (Camb), 2010-07-14) Wu, Yiquan; Liao, I-Chien; Kennedy, Scott J; Du, Jinzhi; Wang, Jun; Leong, Kam W; Clark, Robert LThis communication describes a single-step electrospraying technique that generates core-shell microspheres (CSMs) with encapsulated protein as the core and an amphiphilic biodegradable polymer as the shell. The protein release profiles of the electrosprayed CSMs showed steady release kinetics over 3 weeks without a significant initial burst.Item Open Access Inkless microcontact printing on SAMs of Boc- and TBS-protected thiols.(Nano Lett, 2010-01) Shestopalov, Alexander A; Clark, Robert L; Toone, Eric JWe report a new inkless catalytic muCP technique that achieves accurate, fast, and complete pattern reproduction on SAMs of Boc- and TBS-protected thiols immobilized on gold using a polyurethane-acrylate stamp functionalized with covalently bound sulfonic acids. Pattern transfer is complete at room temperature just after one minute of contact and renders sub-200 nm size structures of chemically differentiated SAMs.Item Open Access Plasmonic Nanoparticles: Factors Controlling Refractive Index Sensitivity(2007-05-10T15:23:09Z) Miller, Molly McBainPlasmonic nanoparticles support surface plasmon resonances that are sensitive to the environment. Factors contributing to the refractive index sensitivity are explored systematically through simulation, theory, and experiment. Particles small with respect to the wavelength of light and with size parameters much less than 1 have optical properties accurately predicted by quasi-electrostatic theory while particles with larger size parameters necessitate electrodynamics. A theory is developed that captures the effects of geometry on the refractive index sensitivity with a single factor, plasmon band location, and, although based on electrostatic theory, well predicts the sensitivity of particles whose properties are beyond the electrostatic limit. This theory is validated by high quality simulations for compact particles with shape parameters approaching 1 and, therefore, electrodynamic in nature, as well as higher aspect ratio particles that are electrostatic. Experimentally observed optical spectra for nanorods immobilized on glass and subjected to changes in n of the medium are used to calculate the sensitivity of the particles, found to be well matched by a variation on the homogeneous plasmon band theory. The separate electrostatic and electrodynamic components of plasmon band width, are explored and the overall width is found to affect the observability of the aforementioned sensitivity similarly within each particle class. The extent of the sensing volume around a spherical particle is explored and found to vary with particle size for small particles. Through simulation of oriented dielectric layers, it is shown particles are most sensitive to material located in regions of highest field enhancement. Variations on seed-mediated growth of gold nanorods results in spectra exhibiting a middle peak, intermediate to the generally accepted longitudinal and transverse modes. Simulated optical properties and calculated field enhancement illustrates the correlation between geometry and optical properties and allows for identification of the middle peak.Item Open Access Simultaneous two-wavelength transmission quantitative phase microscopy with a color camera.(Opt Lett, 2010-08-01) Rinehart, Matthew T; Shaked, Natan T; Jenness, Nathan J; Clark, Robert L; Wax, AdamWe present a quantitative phase microscopy method that uses a Bayer mosaic color camera to simultaneously acquire off-axis interferograms in transmission mode at two distinct wavelengths. Wrapped phase information is processed using a two-wavelength algorithm to extend the range of the optical path delay measurements that can be detected using a single temporal acquisition. We experimentally demonstrate this technique by acquiring the phase profiles of optically clear microstructures without 2pi ambiguities. In addition, the phase noise contribution arising from spectral channel crosstalk on the color camera is quantified.Item Open Access STIFFNESS CALIBRATION OF ATOMIC FORCE MICROSCOPY PROBES UNDER HEAVY FLUID LOADING(2010) Kennedy, Scott JosephThis research presents new calibration techniques for the characterization of atomic force microscopy cantilevers. Atomic force microscopy cantilevers are sensors that detect forces on the order of pico- to nanonewtons and displacements on the order of nano- to micrometers. Several calibration techniques exist with a variety of strengths and weaknesses. This research presents techniques that enable the noncontact calibration of the output sensor voltage-to-displacement sensitivity and the cantilever stiffness through the analysis of the unscaled thermal vibration of a cantilever in a liquid environment.
A noncontact stiffness calibration method is presented that identifies cantilever characteristics by fitting a dynamic model of the cantilever reaction to a thermal bath according to the fluctuation-dissipation theorem. The fitting algorithm incorporates an assumption of heavy fluid loading, which is present in liquid environments.
The use of the Lorentzian line function and a variable-slope noise model as an alternate approach to the thermal noise method was found to reduce the difference between calibrations preformed on the same cantilever in air and in water relative to existing techniques. This alternate approach was used in combination with the new stiffness calibration technique to determine the voltage-to-displacement sensitivity without requiring contact loading of the cantilever.
Additionally, computational techniques are presented in the investigation of alternate cantilever geometries, including V-shaped cantilevers and warped cantilevers. These techniques offer opportunities for future research to further reduce the uncertainty of atomic force microscopy calibration.
Item Open Access The Design Of A Nanolithographic Process(2007-07-02) Johannes, Matthew StevenThis research delineates the design of a nanolithographic process for nanometer scale surface patterning. The process involves the combination of serial atomic force microscope (AFM) based nanolithography with the parallel patterning capabilities of soft lithography. The union of these two techniques provides for a unique approach to nanoscale patterning that establishes a research knowledge base and tools for future research and prototyping.To successfully design this process a number of separate research investigations were undertaken. A custom 3-axis AFM with feedback control on three positioning axes of nanometer precision was designed in order to execute nanolithographic research. This AFM system integrates a computer aided design/computer aided manufacturing (CAD/CAM) environment to allow for the direct synthesis of nanostructures and patterns using a virtual design interface. This AFM instrument was leveraged primarily to study anodization nanolithography (ANL), a nanoscale patterning technique used to generate local surface oxide layers on metals and semiconductors. Defining research focused on the automated generation of complex oxide nanoscale patterns as directed by CAD/CAM design as well as the implementation of tip-sample current feedback control during ANL to increase oxide uniformity. Concurrently, research was conducted concerning soft lithography, primarily in microcontact printing (µCP), and pertinent experimental and analytic techniques and procedures were investigated.Due to the masking abilities of the resulting oxide patterns from ANL, the results of AFM based patterning experiments are coupled with micromachining techniques to create higher aspect ratio structures at the nanoscale. These relief structures are used as master pattern molds for polymeric stamp formation to reproduce the original in a parallel fashion using µCP stamp formation and patterning. This new method of master fabrication provides for a useful alternative to conventional techniques for soft lithographic stamp formation and patterning.Item Open Access Three-dimensional Holographic Lithography and Manipulation Using a Spatial Light Modulator(2009) Jenness, Nathan J.This research presents the development of a phase-based lithographic system for three-dimensional micropatterning and manipulation. The system uses a spatial light modulator (SLM) to display specially designed phase holograms. The use of holograms with the SLM provides a novel approach to photolithography that offers the unique ability to operate in both serial and single-shot modes. In addition to the lithographic applications, the optical system also possesses the capability to optically trap microparticles. New advances include the ability to rapidly modify pattern templates for both serial and single-shot lithography, individually control three-dimensional structural properties, and manipulate Janus particles with five degrees of freedom.
A number of separate research investigations were required to develop the optical system and patterning method. The processes for designing a custom optical system, integrating a computer aided design/computer aided manufacturing (CAD/CAM) platform, and constructing series of phase holograms are presented. The resulting instrument was used primarily for the photonic excitation of both photopolymers and proteins and, in addition, for the manipulation of Janus particles. Defining research focused on the automated fabrication of complex three-dimensional microscale structures based on the virtual designs provided by a custom CAD/CAM interface. Parametric studies were conducted to access the patterning transfer rate and resolution of the system.
The research presented here documents the creation of an optical system that is capable of the accurate reproduction of pre-designed microstructures and optical paths, applicable to many current and future research applications, and useable by anyone interested in researching on the microscale.