Browsing by Author "He, Linchen"
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Item Open Access BUILDING A DATABASE FOR NANOMATERIAL EXPOSURE(2015-04-23) He, LinchenNanomaterials is a type of material with more advanced properties than conventional materials, and both scientists and engineers have a strong motivation to apply them in lots of areas. However, before they are widely applied, it is necessary to understand their toxicity on organisms. To date, large amounts of studies have explored the toxicity of nanomaterials, and they have greatly helped people understand how nanomaterials impact organisms. However, the developing speed of this field is getting slower because it is becoming more difficult for researchers to effectively search for information they need. Building a user-friendly database for nanomaterials and bioactivity is the main objective of this project and it is also an effective solution to address this problem by strengthening the information dissemination in this field. Based on the basic database structure developed by researchers in the Center of Environmental Implications of Nanotechnology (CEINT), exposure data for carbon nanotubes (CNTs) will be collected and imported into the database, and in the meanwhile, the database structure will be further optimized to fit new dataset imported. The method of this project is based on five steps: 1. Finding related studies and sources. 2. Extracting data from sources. 3. Preparing source files for the database. 4. Imputing data into MySQL database. 5. Query data from the database. The database consists of six sections: 1. Materials section: Recording the properties of nanomaterials tested in each study. 2. Environmental System section: Describing the environmental system in which the study was conducted. 3. Biological System section: Recording information about the organisms chosen to conduct exposure experiments. 4. Functional Assay section: Recording the assay that provides a parameter that can be used to describe fate or effects of nanomaterials exposure. 5. Study section: Serving as the main section to connect each previous part and functionalize the whole database. 6. Study_PI_Publication section: Recording information about primary investigator and publication, and connecting this information with Study table. Based on this database structure, I have imported data from 21 studies for CNTs into the database. The whole database works well and several applications have been developed. In my project report, two applications are introduced in detail. Application #1: The impacts of exposing the same organism to different CNTs. Different CNTs usually have different impacts on the same organism. However, most of studies usually focus on one of more types of CNTs. It would be a time-consuming process to review all published papers to understand how organism responds to different CNTs exposure. Building a database is an effective way to help reduce time for searching data. In this project, I targeted at C.elegans as an example to show this application. As a result, C.elegans were exposed to three types of CNTs, and about 359 functional assays were found. Further analysis was conducted based on this selected data. Application #2: The impacts of exposing the same type of CNTs to different organisms. The Same type of CNTs may have different impacts on different organisms. The database is a useful tool to help address this issue. In this project, I wanted to know how single wall carbon nanotubes (SWCNTs) influence different organisms. As a result, among all the dataset stored in my database, there were six organisms were exposed to SWCNTs and considerable amount of functional assays were conducted post SWCNTs exposure. However, currently, the impacts of exposing the same CNTs to different organisms are incomparable, because of following reasons. The first one is that CNTs used in each study is not completely the same, although they are called with the same name. The second is that, due to the limited amount of data, all functional assays are different, and it means that simple comparison is not available to know which organism are more vulnerable to CNTs exposure. This report also provides several key points of the database and recommendations to make a better database for nanomaterials exposure and boost the development of the field of nanomaterials safety. 1. The database can help researchers to avoid doing redundant studies and strengthen the communication between them. Moreover, it is a different search engine by focusing on specific study instead of keywords that is applied by conventional search method 2. The database structure should be further optimized in order to better fit the newly imported dataset. 3. The data quantity can be further expanded by developing a platform for database users to self-report their data. 4. Designing a series of standards for conducting exposure experiment and nanomaterials manufacturing will help to make the results of different studies more comparable. It is also an effective way to help increase the usability of dataset imported into the database. 5. Designing a series of indices, which include results of some normal tests (e.g. biouptake, death rate) and other important biomarkers. Based on analyzing these indices, a model can be built to evaluate the toxicity of exposing a certain type of nanomaterial to an organism.Item Open Access The Role of Melatonin in Pathophysiologic Responses to Air Pollution Exposure(2020) He, LinchenAbstractIt is widely accepted that the pathophysiologic pathways linking air pollution exposure and adverse health effects are via the augmentation of oxidative stress and inflammation in the respiratory tract and the circulatory system. Melatonin is a potent antioxidant and anti-inflammatory molecule and may thereby affect individuals’ biological responses to air pollution exposure. This dissertation aims to investigate the role of melatonin in pathophysiological responses to air pollution exposure. In Aim 1 of this dissertation research, a method was developed to simultaneously measure urinary concentrations of 6-sulfatoxymelatonin (aMT6s) and 8-hydroxy-2'-deoxyguanosine (8-OHdG). As a major metabolite of melatonin excreted in the urine, aMT6s has been widely used as a surrogate of circulating melatonin. Urinary 8-OHdG, a stable product of DNA oxidative damage, has been used as an oxidative stress biomarker. This new method is expected to have important applications in biomedical and environmental health studies involving the oxidative stress pathophysiological pathway. In Aim 2 of this dissertation research, the role of melatonin in oxidative stress responses to air pollution exposure was examined. Stored urine samples collected from 159 healthy adults, and their personal air pollution exposure data were used. These urine samples were analyzed for aMT6s and 8-OHdG; and statistical analyses were conducted to examine the relationships among aMT6s, 8-OHdG and another previously measured urinary oxidative stress biomarker, malondialdehyde (MDA), and pollutant exposures. The results of this analysis suggest the need for controlling for aMT6s as a confounder in using urinary 8-OHdG and MDA as biomarkers of oxidative stress related to short-term air pollution exposure. In Aim 3 of this dissertation research, the role of melatonin in inflammatory responses to air pollution exposure was examined. Blood inflammatory cytokines and urinary aMT6s were measured in 53 healthy adults three times within 2 consecutive months. Personal air pollution exposure was calculated prior to biospecimen collections. The study found that concentrations of proinflammatory cytokines were significantly and negatively associated with O3 exposures averaged over the preceding 12 hours while significantly but positively associated with O3 exposures averaged over the preceding 2 weeks. These findings suggest that exposure to O3 for different time durations may affect systemic inflammatory responses in different ways. In addition, the study found that pro-inflammatory responses to O3 exposure in the preceding 2 weeks may partly result from the depletion of endogenous melatonin by O3. In Aim 4 of this dissertation research, the role of melatonin in pathophysiologic and oxidative stress responses to air pollution exposure in asthmatic children was examined. Urine, nasal fluid, and pulmonary physiology data were obtained from 43 asthmatic children four times with a 2-week interval between the consecutive clinic visits. At each visit, pulmonary physiology indicators, comprised of airway mechanics, lung function, airway inflammation, and asthma symptom scores were measured. Stored urine samples were analyzed for aMT6s, 8-OHdG, and MDA; stored nasal fluid samples were analyzed for MDA. Personal exposures to PM2.5 and O3 prior to a health outcome measurement were calculated. Three major analyses were conducted in the Aim 4 study. First, the associations of personal air pollutant exposures with the indicators of pulmonary physiology were examined. The results show that daily changes in personal exposure to PM2.5 were associated with significantly increased small airway resistance, total airway resistance, and airway inflammation (fractional exhaled nitric oxide, FeNO). The findings suggest the importance of reducing personal exposure to PM2.5 as part of the asthma management plan to improve airflow limitation. Second, statistical analyses were conducted to examine the relationships among personal pollutant exposures, nasal fluid MDA, urinary 8-OHdG, urinary MDA, FeNO, and asthma symptom scores. The results showed that increased personal exposures to PM2.5 and O3 exposure were both associated with increased nasal MDA concentrations and worsened asthma symptom scores. Increased nasal MDA concentration was associated with decreased asthma symptom scores indicating worsening of asthma symptoms. These findings support that MDA in the nasal fluid may serve as a useful biomarker for monitoring asthma status, especially in relation to PM2.5 and O3 exposure, two known risk factors of asthma exacerbation. Third, statistical analyses were conducted to investigate the relationship of urinary aMT6s with personal air pollutant exposures, biomarkers of oxidative stress, and indicators of pulmonary physiology. The results showed that increasing urinary MDA or 8-OHdG concentration and personal exposures to PM2.5 and O3 were associated with increased urinary aMT6s concentrations in asthmatic children. We also found that increased concentration of urinary aMT6s was associated with improved pulmonary inflammation and airway resilience. The results suggest a potential biological mechanism that increased systemic oxidative stress may stimulate the excretion of melatonin as a defense mechanism to alleviate the adverse effects of air pollution exposure. In summary, the findings from this dissertation research support that endogenously generated melatonin can modulate oxidative, inflammatory, and physiological responses to air pollution exposure in a beneficial way. This dissertation research supports the need for future trials to assess the efficacy or effectiveness of using melatonin supplementation to mitigate the adverse health effects of air pollution exposure at the individual level. This is particularly important for susceptible populations living in highly polluted areas (e.g., developing countries and regions subject to frequent wildfires), people with melatonin deficiency, and those using dirty household fuels.