Browsing by Author "Manos, Paul Steven"
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Item Open Access Biotic Interactions in the Genus Anthurium Schott (Araceae)(2018) Hartley, NathanThe genus Anthurium represents one of the largest genera restricted to the neotropics and has long been recognized as one of the "megagenera" of flowering plants, in addition to claiming the bulk of diversity (~25%) in its family, the Araceae. Despite this vast and beguiling array of morphologic diversity, observations on the biotic interactions that Anthurium participate with other living organisms in are scant. Although these types of observations help establish foundational knowledge on the natural history of organisms and are well-known from other large clades of neotropical herbs (i.e., orchids), the few observations that have been made for Anthurium are scattered throughout the literature, and no attempt has been made to synthesize this information. Primary literature documents were procured largely through the Duke Univeristy Library system. A total of 316 discrete biotic interactions are referenced here, 22 of which are evidenced here as new. Previously considered to be pollinated primarily by euglossine bees (Dressler 1968, Williams & Dressler 1976; Croat 1980), this review evidences a diverse assemblage of biotic interactors that complements the taxonomic, morphologic, and ecologic diversity of Anthurium. It is hoped that this information can provide a starting point for current and future researchers to springboard from as they continue to demystify the evolutionary forces that facilitated the diversification of this understudied megagenus
Item Open Access Evolution of Edaphic Ecology in Ceanothus (Rhamnaceae)(2011) Burge, Dylan O.Edaphic factors--those pertaining to the substrate or soil--are thought to play an important role in the diversification of flowering plants. Although edaphic factors are widely interpreted as causal agents in plant diversification, little is known about the evolutionary origin of most edaphic endemic plants, preventing inference of potential mechanisms by which substrate properties may influence speciation. The North American plant genus Ceanothus (Rhamnaceae) contains 9 edaphic-endemic species, taxa restricted to soils derived from specific geological materials. The three components of my dissertation research aim to improve understanding of how edaphic ecology has influenced the diversification of Ceanothus. First, I use DNA sequence data from the low-copy nuclear gene nitrate reductase to reconstruct the phylogeny of Ceanothus and elucidate diversification of this group into the California Floristic Province (CFP) of western North America, including the evolution of edaphic endemism. This research indicates that diversification of the two Ceanothus subgenera (Cerastes and Ceanothus) is centered on the CFP and is characterized by shallow divergence and phylogenetic relationships defined predominantly by geography. Divergence time estimation suggests that diversification of both Ceanothus subgenera began approximately 6 Ma. The nine edaphic-endemic taxa are not phylogenetically clustered in my analyses, suggesting that the origin of edaphic endemism has occurred on multiple occasions, including multiple examples of serpentine endemism. The second chapter of my dissertation uses soil chemistry data in combination with a more detailed examination of genetic variation in nitrate reductase to elucidate the evolution of a single edaphic endemic species.
Item Open Access Host Constraints on the Post-glacial Migration History of the Parasitic Plant, Epifagus Virginiana(2009) Tsai, Yi-Hsin EricaBecause species respond individually to climate change, understanding community assembly requires examination of multiple species from a diversity of forest niches. I present the post-glacial phylogeographic history of an understory, parasitic herb (Epifagus virginiana, beechdrop) that has an obligate and host specific relationship with a common eastern North American hardwood tree (Fagus grandifolia, American beech). The migration histories of the host and parasite are compared to elucidate potential limits on the parasite's range and to understand their responses to shared climate change. Two chloroplast DNA regions were sequenced and 9 microsatellite loci genotyped from parasite specimens collected throughout the host's range. These data were compared with available cpDNA sequences from the host (McLachlan et al. 2005) and host fossil pollen records from the last 21,000 years (Williams et al. 2004). Analyses of genetic diversity reveal high population differentiation in the parasite's southern range, a possible result of long term isolation within multiple southern glacial refuges. Estimates of migration rates and divergence times using Bayesian coalescent methods show the parasite initiating its post-glacial range expansion by migrating northward into the northeast from southern areas, then westward into the midwest, a pattern consistent with the development of high density beech forests. This result is strongly confirmed through spatial linear regression models, which show host density plays a significant role in structuring parasite populations, while the initial migration routes of the host are irrelevant to parasite colonization patterns. Host density is then used as a proxy for the parasite's habitat quality in an effort to identify the geographic locations of its migration corridors. Habitat cost models are parameterized through use of the parasite's genetic data, and landscape path analyses based on the habitat map show a major migration corridor south of the Great Lakes connecting the northeast and midwest. Host density was the major determinant controlling the parasite's range expansion, suggesting a lag time between host and parasite colonization of new territory. Parasites and other highly specialized species may generally migrate slower due to their complex landscape requirements, resulting in disassociation of forest assemblages during these times. From these results, the low migration capacities of highly specialized species may be insufficient to outrun extirpation from their current ranges.
Item Open Access Molecular phylogenetic studies in nyctaginaceae: patterns of diversification in arid North America(2007-05-04T17:36:36Z) Douglas, Norman AlanThe Four O'clock Family (Nyctaginaceae) has a number of genera with unusual morphological and ecological characters, several of which appear to have a "tendency" to evolve repeatedly in Nyctaginaceae. I present a molecular phylogeny for the Nyctaginaceae, consider taxonomic implications, biogeographic patterns, and the evolution of cleistogamy and gypsophily. These characters have each evolved multiple times in the xeric-adapted genera of the family. Further progress towards understanding these phenomena requires specific investigation of the ecology of pollination and gypsum tolerance. In the genus Boerhavia, an intensively sampled phylogeny based on internal transcribed spacer (ITS) and nitrate reductase (NIA) sequences provides new insights into relationships among species in the genus, and identifies a clade of annual species centered in the Sonoran Desert. Phylogeographic patterns are present in the genus that may reflect both relatively ancient vicariant events as well as the post-Pleistocene expansion of the Sonoran Desert. Many species in this group are found to be genetically cohesive, however two annual species complexes are found which species were nonmonophyletic. Since several mechanisms can potentially lead to the finding of nonmonophyletic species, Amplified Fragment Length Polymorphisms (AFLPs) were used to examine the structure of genetic variation in the two complexes. These data show that in these two groups, different evolutionary mechanisms are needed to explain the distribution of genetic diversity within and among populations. A complex comprised of Boerhavia spicata and B. xanti shows little evidence of genetic divergence between the species in Sonora, a pattern which may indicate recent contact between two very closely related forms. In contrast, high genetic structure between populations is found in the other complex, which contains the species with umbellate inflorescences. This complex includes several nominal species with highly restricted distributions, whose evolution may have been facilitated by low gene flow among populations. Little evidence was found for associations of inbreeding within populations, and floral traits which might be expected to influence outcrossing rates.Item Open Access The Effects of Geography, Environment and Phylogeny on Community Assembly and Gene Flow Dynamics(2014) Meireles, Jose Eduardo C.It is increasingly evident that evolutionary processes play a role in how ecological communities are assembled. However the extend to which evolution influences how plants respond to spatial and environmental gradients and interact with each other is less clear. In this dissertation I leverage evolutionary tools and thinking to understand how space and environment affect community composition and patterns of gene flow in a unique system of Atlantic rainforest and restinga (sandy coastal plains) habitats in Southeastern Brazil.
In chapter one I investigate how space and environment affect the population genetic structure and gene flow of Aechmea nudicaulis, a bromeliad species that co-occurs in forest and restinga habitats. I genotyped seven microsatellite loci and sequenced one chloroplast DNA region for individuals collected in 7 pairs of forest / restinga sites. Bayesian genetic clustering analyses show that populations of A. nudicaulis are geographically structured in northern and southern populations, a pattern consistent with broader scale phylogeographic dynamics of the Atlantic rainforest. On the other hand, explicit migration models based on the coalescent estimate that inter-habitat gene flow is less common than gene flow between populations in the same habitat type, despite their geographic discontinuity. I conclude that there is evidence for repeated colonization of the restingas from forest populations even though the steep environmental gradient between habitats is a stronger barrier to gene flow than geographic distance.
In chapter two I use data on 2800 individual plants finely mapped in a restinga plot and on first-year survival of 500 seedlings to understand the roles of phylogeny, functional traits and abiotic conditions in the spatial structuring of that community. I demonstrate that phylogeny is a poor predictor of functional traits in and that convergence in these traits is pervasive. In general, the community is not phylogenetically structured, with at best 14% of the plots deviating significantly from the null model. The functional traits SLA, leaf dry matter content (LDMC), and maximum height also showed no clear pattern of spatial structuring. On the other hand, leaf area is strongly overdispersed across all spatial scales. Although leaf area overdispersion would be generally taken as evidence of competition, I argue that interpretation is probably misleading. Finally, I show that seedling survival is dramatically increased when they grow shaded by an adult individual, suggesting that seedlings are being facilitated. Phylogenetic distance to their adult neighbor has no influence on rates of survival though. Taken together, these results indicate that phylogeny has very limited influence on the fine scale assembly of restinga communities.
Item Open Access The Evolution and Diversification of Epiphytic Ferns(2007-05-03T18:53:24Z) Schuettpelz, EricLeptosporangiate ferns, with more than 9000 extant species, are truly exceptional among the non-flowering lineages of vascular plants. However, this rather remarkable diversity was not simply a consequence of being able to "hold on" as flowering plants rose to dominance. Instead, it appears to be the result of an ecological opportunistic response to the establishment of more complex, angiosperm-dominated ecosystems. The proliferation of flowering plants across the landscape undoubtedly resulted in the formation of a plethora of new niches into which leptosporangiate ferns could diversify. Many of these were evidently on shady forest floors, but many others were actually within the new angiosperm-dominated canopies. Today, almost one third of leptosporangiate species grow as epiphytes on angiosperm trees. My dissertation aims to demystify the evolution and diversification of epiphytic ferns in order to more fully understand the leptosporangiate success story. By assembling and analyzing the most inclusive molecular dataset for leptosporangiate ferns to date, I provide unprecedented insight into overall fern relationships and a solid and balanced phylogenetic framework within which the evolution of epiphytism can be examined. By employing this phylogeny and numerous constraints from the fern fossil record, I uncover the timing of epiphytic fern diversification and examine the origin of the modern tropical rain forest biome in which these ferns reside.Item Open Access The Golden Relationships: An Exploration of Fibonacci Numbers and Phi(2017-04-25) Watson, Anthony RThe Greek letter Ø (Phi), represents one of the most mysterious numbers (1.618…) known to humankind. Historical reverence for Ø led to the monikers “The Golden Number” or “The Devine Proportion”. This simple, yet enigmatic number, is inseparably linked to the recursive mathematical sequence that produces Fibonacci numbers. Fibonacci numbers have fascinated and perplexed scholars, scientists, and the general public since they were first identified by Leonardo Fibonacci in his seminal work Liber Abacci in 1202. These transcendent numbers which are inextricably bound to the Golden Number, seemingly touch every aspect of plant, animal, and human existence. The most puzzling aspect of these numbers resides in their universal nature and our inability to explain their pervasiveness. An understanding of these numbers is often clouded by those who seemingly find Fibonacci or Golden Number associations in everything that exists. Indeed, undeniable relationships do exist; however, some represent aspirant thinking from the observer’s perspective. My work explores a number of cases where these relationships appear to exist and offers scholarly sources that either support or refute the claims. By analyzing research relating to biology, art, architecture, and other contrasting subject areas, I paint a broad picture illustrating the extensive nature of these numbers. In particular, the role of Fibonacci Numbers in the plant and animal kingdoms is analyzed within the context of quantification. Likewise, art, architecture, and aesthetics is examined for Fibonacci and Golden relationships to determine if an innate human preference for these associations exists and to what degree it can be measured. Finally, I draw conclusions supporting the existence of these unique relationships, and offer theories supporting adaptive advantages in living entities.Item Open Access Thinking Like a Mountain: The American Antiquities Act in Its Political and Ideological Milieu(2015-08-05) Scheirer, Daniel II*Designated as an exemplary master's project for 2015-16*
The nucleus of this project is a text, the American Antiquities Act. It was the desire to understand this text more fully on its own terms that compelled me to begin asking questions like: “What can this document reveal about the historical moment from which it emerged?” “How does it bear witness to, and itself help to effect a fundamental shift in the way we think about the land we inhabit?“ What, in essence, is its intellectual and historical genealogy?” Today, the Antiquities Act may seem to be an uncomplicated reality, its raison d'etre self-evident and easily taken for granted; but it does not exist, nor was it created, in a vacuum. The Antiquities Act is a testament to the will of a society to reorient itself towards a new relationship with the natural world. In examining this reorientation, this project explores major historical influences that spurred the growth of conservationist ideals in the United States, highlighting key individuals in order to understand their motivations and trace the formation of their support for the Antiquities Act. Finally, it examines the document itself and discusses, in part, the legislative history and legacy of the act. As these inquiries demonstrate, the American Antiquities Act was not the inevitable outcome of any natural or inexorable processes at work in American culture or society. Rather, it represents a product of the confluence of specific political, philosophical, and societal energies that animated the Act’s historical context. It is these energies and their contexts that give the American Antiquities Act historical cogency.