Browsing by Author "Roth, V Louise"
Results Per Page
Sort Options
Item Open Access Ecological Factors and Historical Biogeography Influence the Evolutionary Divergence of Insular Rodents(2014) Durst, Paul Alexander PinetteIslands have been the inspiration for some of evolutionary biology's most important advances. This is largely due to the unique properties of islands that promote the differentiation of island species from their mainland counterparts. Rodents are widely distributed across even the most remote islands, a rarity among mammals, making them uniquely suited to study the factors leading to the divergence of insular species. In this dissertation, I use two case studies to examine the morphological and genetic divergences that take place in an insular environment.
In chapters one and two, I examine how different factors influence insular body size change in rodents. In chapter one, I examine factors influencing the direction of island body size change using classification tree and random forest (CART) analyses. I observe strong consistency in the direction of size change within islands and within species, but little consistency at broader taxonomic scales. Including island and species traits in the CART analyses, I find mainland body mass to be the most important factor influencing size change. Other variables are significant, though their roles seem to be context-dependent.
In chapter two, I use the distributions of mainland rodent population body sizes to identify `extreme' insular rodent populations and compare traits associated with those populations and their islands with those island populations of a more typical size. I find that althought there is no trend among all insular rodents towards a larger or smaller size, `extreme' populations are more likely to increase in size. Using CART methods, I develop a predictive model for insular size change that identifies resource limitations as the main driver when insular rodent populations become `extremely small'.
Chapters three and four shift their focus to a single rodent species, the deer mouse Peromyscus maniculatus, as they examine the genetic differentiation of deer mice across the California Channel Islands and the nearby mainland. In chapter three, I sequence a region of the mitochondrial control region for individuals from 8 populations across the northern Channel Islands and two mainland sites, and I analyze these sequences by calculating population genetics parameters and creating a Bayesian inference tree and a statistical parsimony haplotype network. All of these analyses reveal significant divergences between island and mainland populations. Among the islands, Santa Barbara and Anacapa islands both display unique genetic signatures, but the other northern islands remain relatively undifferentiated.
In chapter four, I genotype individuals from the previous chapter at 5 microsatellite loci, I calculate additional population genetics parameters and I utilize a Bayesian clustering algorithm to examine the similarities and differences between nuclear and mitochondrial analyses. I find the nuclear data to be largely congruent with the mitochondrial analyses; there are significant differences between island and mainland populations, and Anacapa Island is significantly differentiated from the other islands. Unlike the previous analyses, Santa Barbara Island is not significantly different from the northern islands, yet San Miguel Island has a unique genetic signature.
These studies underscore the importance of ecological processes and historical biogeography in the generation of diversity, and they highlight the role of islands as drivers of evolutionary divergence.
Item Open Access Evolution, Development, and Morphology of Cetacean Skull Novelties(2019) Roston, Rachel A.Novelty presents a paradox in evolutionary biology. Novel features appear to be qualitatively unique to a specific type of organism, but historical continuity requires that some common form must have pre-existed them. This dissertation focuses on the morphology and development of three inter-related evolutionary novelties of cetacean skulls: telescoping, the blowhole, and extensive maxillo-frontal overlap. To investigate these novelties, museum specimens and skulls collected from stranded dolphins were studied using computed tomography, morphometrics, and histological methods. The first part of this dissertation sets an evolutionary-developmental framework for empirical study of skull telescoping, defined as extensive bone overlap and shortened maxillo-occipital distance (Chapter 2). The following two chapters (3 and 4) identify distinct ontogenetic changes that contribute to reorientation of the blowhole in a dolphin species and the fin whale. Lastly, the maxillo-frontal in the bottlenose dolphin was characterized using computed tomography and histological methods (Chapter 5).
Item Open Access Evolutionary Trends in the Individuation and Polymorphism of Colonial Marine Invertebrates(2007-05-10T16:02:15Z) Venit, Edward PeterAll life is organized hierarchically. Lower levels, such as cells and zooids, are nested within higher levels, such as multicellular organisms and colonial animals. The process by which a higher-level unit forms from the coalescence of lower-level units is known as “individuation”. Individuation is defined by the strength of functional interdependencies among constituent lower-level units. Interdependency results from division of labor, which is evidenced in colonial metazoans as zooid polymorphism. As lower-level units specialize for certain tasks, they become increasing dependant on the rest of the collective to perform other tasks. In this way, the evolution of division of labor drives the process of individuation. This study explores several ways in which polymorphism evolves in colonial marine invertebrates such as cnidarians, bryozoans, and urochordates. A previous study on the effect of environmental stability on polymorphism is revisted and reinterpreted. A method for quantifying colonial-level individuation by measuring the spatial arrangement of polymorphic zooids is proposed and demonstrated. Most significantly, a comparison across all colonial marine invertebrate taxa reveals that polymorphism only appears in those colonial taxa with moderately to strongly compartmentalized zooids. Weakly compartmentalized and fully compartmentalized taxa are universally monomorphic. This pattern is seen across all colonial marine invertebrate taxa and is interpreted as a “rule” governing the evolution of higher-level individuation in the major taxa of colonial marine invertebrates. The existence of one rule suggests that there may be others, including rules that transcend levels of biological hierarchy. The identification of such rules would strongly suggest that new levels in the hierarchy of life evolve by a universal pattern that is independent of the type of organism involved.Item Open Access Morphometric Analysis of an Ontogenetic Series of Dolphin Cranial Endocasts(2019-05) Cleveland, Sierra J.The earliest stages of life mark a critical period of brain growth and cranial expansion that has been thoroughly studied in many cognitively complex species but not in dolphins. Marine mammal protection policies restrict certain invasive avenues of research critical to understanding brain growth in other species, but previous studies have found success in using CT scans from deceased, stranded dolphins to understand brain morphology through endocranial data. Thus, this study aimed to utilize cranial endocasts as a proxy for brains. Using the 3D surface modeling program Avizo, I generated virtual cranial endocasts from CT scans of an ontogenetic series of dolphin skulls. The endocasts were then 3D printed and used to form a silicone mold in which the cerebrum and cerebellum were individually delineated, modeled with clay, and weighed. Specimen ages ranged from fetus to adult. Existing literature has shown that before birth, the growth of the dolphin cerebellum surpasses that of the cerebrum; it has been suggested that this is due to establishing basic motor functions controlled by the cerebellum in preparation for aquatic life. Thus, I predicted that after birth the growth rate of the cerebrum will be faster than that of the cerebellum as more cognitively complex behaviors such as social interaction develop. However, hindbrain data collected through these methods were imprecise and could not be used. Future research might have more success with different, more sturdy types of molds and mold-making materials. This method may best be applied to older specimens with more developed cerebella.Item Open Access Stable isotope analyses reveal impacts of resource availability and interspecies competition on body sizes of California Channel Islands deer mice(2018-04-23) Zhang, JoyIsland rodent populations have challenged Foster’s rule for insular mammal body size with inconsistent size patterns when compared to mainland populations. Many factors have been implicated in models of island rodent size changes including island area, climate, predation, and competition with other species. Connecting these factors is their influence on resource availability and how rodents preferentially consume different amounts of macromolecules such as carbohydrates and proteins. I studied rodent diet using stable isotope analysis, in the absence of sampling stomach contents or surveying the flora and fauna in the area where the rodents were trapped. Utilizing stable isotope analysis, I examined carbon (13C) and nitrogen (15N) stable isotopes in deer mice (Peromyscus maniculatus) and black rats’ (Rattus rattus) hair collected from recent and historical samples captured on the California Channel Islands. I hypothesized that larger deer mice body size would correlate with greater protein consumption and higher 13C and 15N concentrations. Additionally, I hypothesized that significant variation in deer mice body size and 15N values between islands would be explained by differences in resource availability on islands with or without nesting seabirds and the presence or absence of other rodent species that compete with deer mice for resources. While 13C did not reliably predict the origin of rodent diet components, body mass, body length, and 15N concentration appeared to correlate with availability of protein from seabird materials (eggs and hatchlings) and the absence of competing rodent species. In interpreting the significant differences in body mass and 15N concentration for deer mice on islands with and without seabirds, I considered El Niño Southern Oscillation (ENSO) weather effects on seabird reproductive behavior and species distribution since the deer mice were collected in different years. In the comparison of Anacapa Island deer mice before and after rat eradication, it is possible that artificial selection of larger Anacapa Island deer mice occurred due to the trapping and re-release of a small population of deer mice on Anacapa Island during black rat eradication.Item Open Access The Allometry of Giant Flightless Birds(2007-05-10T14:55:00Z) Dickison, Michael R.Despite our intuition, birds are no smaller than mammals when the constraints of a flying body plan are taken into account. Nevertheless, the largest mammals are ten times the mass of the largest birds. Allometric equations generated for anseriforms and ratites suggest mid-shaft femur circumference is the best measure to use in estimating avian body mass. The small sample size of extant ratites makes mass estimate extrapolation to larger extinct species inaccurate. The division of ratites into cursorial and graviportal groups is supported. Aepyornithids do not show atypical femoral shaft asymmetry. New and more accurate estimates of egg masses, and separate male and female body masses for sexually-dimorphic ratites are generated. Egg mass scaling exponents for individual bird orders differ from that Aves as a whole, probably due to between-taxa effects. Ratite egg mass does not scale with the same exponent as other avian orders, whether kiwi are included or excluded. Total clutch mass in ratites, however, scales similarly to egg mass in other birds, perhaps as a consequence of the extreme variation in ratite clutch size. Kiwi and elephant bird eggs are consistent with the allometric trend for ratites as a whole, taking clutch size into account. Thus kiwi egg mass is probably an adaptation for a precocial life history, not a side effect of their being a dwarfed descendant of a moa-sized ancestor. Relatively small body size in ancestral kiwis is consistent with a trans-oceanic dispersal to New Zealand in the Tertiary, as suggested by recent molecular trees. This implies multiple loss of flight in Tertiary ratite lineages, which is supported by biogeographic, molecular, paleontological, and osteological evidence, but which is not the currently prevailing hypothesis.Item Open Access The Evolution and Diversification of Epiphytic Ferns(2007-05-03T18:53:24Z) Schuettpelz, EricLeptosporangiate ferns, with more than 9000 extant species, are truly exceptional among the non-flowering lineages of vascular plants. However, this rather remarkable diversity was not simply a consequence of being able to "hold on" as flowering plants rose to dominance. Instead, it appears to be the result of an ecological opportunistic response to the establishment of more complex, angiosperm-dominated ecosystems. The proliferation of flowering plants across the landscape undoubtedly resulted in the formation of a plethora of new niches into which leptosporangiate ferns could diversify. Many of these were evidently on shady forest floors, but many others were actually within the new angiosperm-dominated canopies. Today, almost one third of leptosporangiate species grow as epiphytes on angiosperm trees. My dissertation aims to demystify the evolution and diversification of epiphytic ferns in order to more fully understand the leptosporangiate success story. By assembling and analyzing the most inclusive molecular dataset for leptosporangiate ferns to date, I provide unprecedented insight into overall fern relationships and a solid and balanced phylogenetic framework within which the evolution of epiphytism can be examined. By employing this phylogeny and numerous constraints from the fern fossil record, I uncover the timing of epiphytic fern diversification and examine the origin of the modern tropical rain forest biome in which these ferns reside.