Browsing by Author "Zhang, Hongbo"

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    Genomic signatures of near-extinction and rebirth of the crested ibis and other endangered bird species
    (GENOME BIOLOGY, 2014) Li, Shengbin; Li, Bo; Cheng, Cheng; Xiong, Zijun; Liu, Qingbo; Lai, Jianghua; Carey, Hannah V; Zhang, Qiong; Zheng, Haibo; Wei, Shuguang; Zhang, Hongbo; Chang, Liao; Liu, Shiping; Zhang, Shanxin; Yu, Bing; Zeng, Xiaofan; Hou, Yong; Nie, Wenhui; Guo, Youmin; Chen, Teng; Han, Jiuqiang; Wang, Jian; Wang, Jun; Chen, Chen; Liu, Jiankang; Stambrook, Peter J; Xu, Ming; Zhang, Guojie; Gilbert, M Thomas P; Yang, Huanming; Jarvis, Erich D; Yu, Jun; Yan, Jianqun
    BACKGROUND: Nearly one-quarter of all avian species is either threatened or nearly threatened. Of these, 73 species are currently being rescued from going extinct in wildlife sanctuaries. One of the previously most critically-endangered is the crested ibis, Nipponia nippon. Once widespread across North-East Asia, by 1981 only seven individuals from two breeding pairs remained in the wild. The recovering crested ibis populations thus provide an excellent example for conservation genomics since every individual bird has been recruited for genomic and demographic studies. RESULTS: Using high-quality genome sequences of multiple crested ibis individuals, its thriving co-habitant, the little egret, Egretta garzetta, and the recently sequenced genomes of 41 other avian species that are under various degrees of survival threats, including the bald eagle, we carry out comparative analyses for genomic signatures of near extinction events in association with environmental and behavioral attributes of species. We confirm that both loss of genetic diversity and enrichment of deleterious mutations of protein-coding genes contribute to the major genetic defects of the endangered species. We further identify that genetic inbreeding and loss-of-function genes in the crested ibis may all constitute genetic susceptibility to other factors including long-term climate change, over-hunting, and agrochemical overuse. We also establish a genome-wide DNA identification platform for molecular breeding and conservation practices, to facilitate sustainable recovery of endangered species. CONCLUSIONS: These findings demonstrate common genomic signatures of population decline across avian species and pave a way for further effort in saving endangered species and enhancing conservation genomic efforts.
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    Highly efficient oxygen reduction electrocatalysts based on winged carbon nanotubes.
    (Scientific reports, 2013-11) Cheng, Yingwen; Zhang, Hongbo; Varanasi, Chakrapani V; Liu, Jie
    Developing electrocatalysts with both high selectivity and efficiency for the oxygen reduction reaction (ORR) is critical for several applications including fuel cells and metal-air batteries. In this work we developed high performance electrocatalysts based on unique winged carbon nanotubes. We found that the outer-walls of a special type of carbon nanotubes/nanofibers, when selectively oxidized, unzipped and exfoliated, form graphene wings strongly attached to the inner tubes. After doping with nitrogen, the winged nanotubes exhibited outstanding activity toward catalyzing the ORR through the four-electron pathway with excellent stability and methanol/carbon monoxide tolerance. While the doped graphene wings with high active site density bring remarkable catalytic activity, the inner tubes remain intact and conductive to facilitate electron transport during electrocatalysis.