Browsing by Subject "Graph theory"
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Item Open Access AN APPLICATION OF GRAPH DIFFUSION FOR GESTURE CLASSIFICATION(2020) Voisin, Perry SamuelReliable and widely available robotic prostheses have long been a dream of science fiction writers and researchers alike. The problem of sufficiently generalizable gesture recognition algorithms and technology remains a barrier to these ambitions despite numerous advances in computer science, engineering, and machine learning. Often the failure of a particular algorithm to generalize to the population at large is due to superficial characteristics of subjects in the training data set. These superficial characteristics are captured and integrated into the signal intended to capture the gesture being performed. This work applies methods developed in computer vision
and graph theory to the problem of identifying pertinent features in a set of time series modalities.
Item Open Access High-Resolution Multi-Shot Diffusion Imaging of Structural Networks in Healthy Neurocognitive Aging.(NeuroImage, 2023-05) Merenstein, Jenna L; Zhao, Jiayi; Mullin, Hollie A; Rudolph, Marc D; Song, Allen W; Madden, David JHealthy neurocognitive aging has been associated with the microstructural degradation of white matter pathways that connect distributed gray matter regions, assessed by diffusion-weighted imaging (DWI). However, the relatively low spatial resolution of standard DWI has limited the examination of age-related differences in the properties of smaller, tightly curved white matter fibers, as well as the relatively more complex microstructure of gray matter. Here, we capitalize on high-resolution multi-shot DWI, which allows spatial resolutions < 1 mm3 to be achieved on clinical 3T MRI scanners. We assessed whether traditional diffusion tensor-based measures of gray matter microstructure and graph theoretical measures of white matter structural connectivity assessed by standard (1.5 mm3 voxels, 3.375 μl volume) and high-resolution (1 mm3 voxels, 1μl volume) DWI were differentially related to age and cognitive performance in 61 healthy adults 18-78 years of age. Cognitive performance was assessed using an extensive battery comprising 12 separate tests of fluid (speed-dependent) cognition. Results indicated that the high-resolution data had larger correlations between age and gray matter mean diffusivity, but smaller correlations between age and structural connectivity. Moreover, parallel mediation models including both standard and high-resolution measures revealed that only the high-resolution measures mediated age-related differences in fluid cognition. These results lay the groundwork for future studies planning to apply high-resolution DWI methodology to further assess the mechanisms of both healthy aging and cognitive impairment.Item Open Access Improved connectivity analysis using multiple low-cost paths to evaluate habitat for the endangered San Martin titi monkey (Callicebus oenanthe) in north-central Peru(2017-04-28) Walker, NathanGraph theoretic evaluations of habitat connectivity often rely upon least cost path analyses to determine the connectedness of any two habitat patches, based on an underlying cost surface. I present two improvements upon these commonly used methods. First, rather than using a single least-cost path, I use multiple low-cost paths. This allows me to differentiate between habitat patches that are connected only through a single narrow corridor, and habitat patches that are connected through a wide swath of traversable lands. The ability to identify habitat patches with greater numbers of possible routes to other patches is of interest for resiliency planning and prioritization in the face of continued habitat loss and climate change. The second improvement I present is that instead of relying upon a single cost surface to evaluate connectivity, I iteratively generate landscapes with spatially varying costs. By testing a variety of alternative cost surfaces, I can better account for spatial uncertainty in my input data. As a case study to test these methods, I am evaluating habitat connectivity for the endangered San Martin titi monkey (Callicebus oenanthe) in north-central Peru.Item Open Access Influence of structural and functional brain connectivity on age-related differences in fluid cognition.(Neurobiology of aging, 2020-12) Madden, David J; Jain, Shivangi; Monge, Zachary A; Cook, Angela D; Lee, Alexander; Huang, Hua; Howard, Cortney M; Cohen, Jessica RWe used graph theoretical measures to investigate the hypothesis that structural brain connectivity constrains the influence of functional connectivity on the relation between age and fluid cognition. Across 143 healthy, community-dwelling adults 19-79 years of age, we estimated structural network properties from diffusion-weighted imaging and functional network properties from resting-state functional magnetic resonance imaging. We confirmed previous reports of age-related decline in the strength and efficiency of structural networks, as well as in the connectivity strength within and between structural network modules. Functional networks, in contrast, exhibited age-related decline only in system segregation, a measure of the distinctiveness among network modules. Aging was associated with decline in a composite measure of fluid cognition, particularly tests of executive function. Functional system segregation was a significant mediator of age-related decline in executive function. Structural network properties did not directly influence the age-related decline in functional system segregation. The raw correlational data underlying the graph theoretical measures indicated that structural connectivity exerts a limited constraint on age-related decline in functional connectivity.Item Open Access Tree Topology Estimation(2013) Estrada, Rolando JoseTree-like structures are fundamental in nature. A wide variety of two-dimensional imaging techniques allow us to image trees. However, an image of a tree typically includes spurious branch crossings and the original relationships of ancestry among edges may be lost. We present a methodology for estimating the most likely topology of a rooted, directed, three-dimensional tree given a single two-dimensional image of it. We regularize this inverse problem via a prior parametric tree-growth model that realistically captures the morphology of a wide variety of trees. We show that the problem of estimating the optimal tree has linear complexity if ancestry is known, but is NP-hard if it is lost. For the latter case, we present both a greedy approximation algorithm and a heuristic search algorithm that effectively explore the space of possible trees. Experimental results on retinal vessel, plant root, and synthetic tree datasets show that our methodology is both accurate and efficient.