Browsing by Subject "MRBAYES"
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Item Open Access A molecular phylogeny of scaly tree ferns (Cyatheaceae).(American journal of botany, 2007-05) Korall, P; Conant, DS; Metzgar, JS; Schneider, H; Pryer, KMTree ferns recently were identified as the closest sister group to the hyperdiverse clade of ferns, the polypods. Although most of the 600 species of tree ferns are arborescent, the group encompasses a wide range of morphological variability, from diminutive members to the giant scaly tree ferns, Cyatheaceae. This well-known family comprises most of the tree fern diversity (∼500 species) and is widespread in tropical, subtropical, and south temperate regions of the world. Here we investigate the phylogenetic relationships of scaly tree ferns based on DNA sequence data from five plastid regions (rbcL, rbcL-accD IGS, rbcL-atpB IGS, trnG-trnR, and trnL-trnF). A basal dichotomy resolves Sphaeropteris as sister to all other taxa and scale features support these two clades: Sphaeropteris has conform scales, whereas all other taxa have marginate scales. The marginate-scaled clade consists of a basal trichotomy, with the three groups here termed (1) Cyathea (including Cnemidaria, Hymenophyllopsis, Trichipteris), (2) Alsophila sensu stricto, and (3) Gymnosphaera (previously recognized as a section within Alsophila) + A. capensis. Scaly tree ferns display a wide range of indusial structures, and although indusium shape is homoplastic it does contain useful phylogenetic information that supports some of the larger clades recognised.Item Open Access A revised generic classification of vittarioid ferns (Pteridaceae) based on molecular, micromorphological, and geographic data(Taxon, 2016-08-01) Schuettpelz, E; Chen, C; Kessler, M; Pinson, JB; Johnson, G; Davila, A; Cochran, AT; Huiet, L; Pryer, KM© International Association for Plant Taxonomy (IAPT) 2016. Vittarioid ferns compose a well-supported clade of 100-130 species of highly simplified epiphytes in the family Pteridaceae. Generic circumscriptions within the vittarioid clade were among the first in ferns to be evaluated and revised based on molecular phylogenetic data. Initial analyses of rbcL sequences revealed strong geographic structure and demonstrated that the two largest vittarioid genera, as then defined, each had phylogenetically distinct American and Old World components. The results of subsequent studies that included as many as 36 individuals of 33 species, but still relied on a single gene, were generally consistent with the early findings. Here, we build upon the previous datasets, incorporating many more samples (138 individuals representing 72 species) and additional plastid markers (atpA, chlN, rbcL, rpoA). Analysis of our larger dataset serves to better characterize known lineages, reveals new lineages, and ultimately uncovers an underlying geographic signal that is even stronger than was previously appreciated. In our revised generic classification, we recognize a total of eleven vittarioid genera. Each genus, including the new genus Antrophyopsis (Benedict) Schuettp., stat. nov., is readily diagnosable based on morphology, with micromorphological characters related to soral paraphyses and spores complementing more obvious features such as venation and the distribution of sporangia. A key to the currently recognized vittarioid genera, brief generic descriptions, and five new species combinations are provided.Item Open Access Phylogeny and relationships of the neotropical Adiantum raddianum group (Pteridaceae)(Taxon, 2016-12-01) Hirai, RY; Schuettpelz, E; Huiet, L; Pryer, KM; Smith, AR; Prado, J© International Association for Plant Taxonomy (IAPT) 2016. With more than 200 species, the maidenhair fern genus Adiantum is among the top ten most diverse fern genera. Adiantum is pantropical in distribution and, due to the presence of a unique synapomorphy (sporangia borne on indusia rather than laminae), perhaps the most easily recognized fern genus. Many of its members, including numerous cultivars derived from A. raddianum, are grown as ornamentals. Because of its size, a comprehensive taxonomic study of Adiantum is difficult and the genus is perhaps better approached through a series of narrower studies. Here, we focus specifically on A. raddianum and putative allies. We find a newly defined A. raddianum group to be strongly supported as monophyletic and segregated from other maidenhair ferns on the basis of genetic as well as morphological characteristics. Bayesian inference and maximum likelihood analyses of plastid atpA, chlL, chlN, rbcL, and rpoA sequences support the A raddianum clade as sister to A poiretii and its allies. We identify round-reniform indusia to be a characteristic of the A.raddianum group (vs. lunate in the A.poiretii group). Additionally, we find species in the Apoiretii group to differ in having a unique 66 nucleotide deletion in our chlN gene alignment. The neotropical Araddianum group comprises at least 17 species (14 studied here), some widely distributed; one was recently described (A. alan-smithii).Item Open Access The paraphyly of Osmunda is confirmed by phylogenetic analyses of seven plastid loci(Systematic Botany, 2008-03-01) Metzgar, JS; Skog, JE; Zimmer, EA; Pryer, KMTo resolve phylogenetic relationships among all genera and subgenera in Osmundaceae, we analyzed over 8,500 characters of DNA sequence data from seven plastid loci (atpA, rbcL, rbcL-accD, rbcL-atpB, rps4-trnS, trnG-trnR, and trnL-trnF). Our results confirm those from earlier anatomical and single-gene (rbcL) studies that suggested Osmunda s.l. is paraphyletic. Osmunda cinnamomea is sister to the remainder of Osmundaceae (Leptopteris, Todea, and Osmunda s.s.). We support the recognition of a monotypic fourth genus, Osmundastrum, to reflect these results. We also resolve subgeneric relationships within Osmunda s.s. and find that subg. Claytosmunda is strongly supported as sister to the rest of Osmunda. A stable, well-supported classification for extant Osmundaceae is proposed, along with a key to all genera and subgenera. © Copyright 2008 by the American Society of Plant Taxonomists.