Browsing by Subject "Mathematical & Computational Biology"
Now showing 1 - 4 of 4
- Results Per Page
- Sort Options
Item Open Access Evolution of altruism under group selection in large and small populations in fluctuating environments(Theoretical Population Biology, 1979-01-01) Uyenoyama, MKA continuous, graded form of group selection which does not involve extinction of demes can effectively oppose selection on the individual level against an altruistic allele under fluctuating environments in infinitely large demes among which uniform mixing occurs every generation. Although group selection cannot alter the conditions necessary for the initial increase of altruistic alleles, group selection can significantly influence the stationary distribution of gene frequency which is attained once stochastic forces have allowed theirintroduction. Drift is a more effective source of variation than fluctuations in selection when the variance in selection is moderate to small. High numbers of demes promote polymorphism under both graded group selection and extinction group selection. © 1979.Item Open Access On relatedness and adaptive topography in kin selection(Theoretical Population Biology, 1981-01-01) Uyenoyama, MK; Feldman, MWItem Open Access The DBCLS BioHackathon: standardization and interoperability for bioinformatics web services and workflows(J. Biomed. Semantics, 2010-08) Katayama, Toshiaki; Arakawa, Kazuharu; Nakao, Mitsuteru; Ono, Keiichiro; Aoki-Kinoshita, Kiyoko F; Yamamoto, Yasunori; Yamaguchi, Atsuko; Kawashima, Shuichi; Chun, Hong-Woo; Aerts, Jan; Aranda, Bruno; Barboza, Lord Hendrix; Bonnal, Raoul J; Bruskiewich, Richard; Bryne, Jan C; Fernendez, Jose M; Funahashi, Akira; Gordon, Paul M; Goto, Naohisa; Groscurth, Andreas; Gutteridge, Alex; Holland, Richard; Kano, Yoshinobu; Kawas, Edward A; Kerhornou, Arnaud; Kibukawa, Eri; Kinjo, Akira R; Kuhn, Michael; Lapp, Hilmar; Lehvaslaiho, Heikki; Nakamura, Hiroyuki; Nakamura, Yasukazu; Nishizawa, Tatsuya; Nobata, Chikashi; Noguchi, Tamotsu; Oinn, Thomas M; Okamoto, Shinobu; Owen, Stuart; Pafilis, Evangelos; Pocock, Matthew; Prins, Pjotr; Ranzinger, Rene; Reisinger, Florian; Salwinski, Lukasz; Schreiber, Mark; Senger, Martin; Shigemoto, Yasumasa; Standley, Daron M; Sugawara, Hideaki; Tashiro, Toshiyuki; Trelles, Oswaldo; Vos, Rutger A; Wilkinson, Mark D; York, William; Zmasek, Christian M; Asai, Kiyoshi; Takagi, ToshihisaABSTRACT: Web services have become a key technology for bioinformatics, since life science databases are globally decentralized and the exponential increase in the amount of available data demands for efficient systems without the need to transfer entire databases for every step of an analysis. However, various incompatibilities among database resources and analysis services make it difficult to connect and integrate these into interoperable workflows. To resolve this situation, we invited domain specialists from web service providers, client software developers, Open Bio* projects, the BioMoby project and researchers of emerging areas where a standard exchange data format is not well established, for an intensive collaboration entitled the BioHackathon 2008. The meeting was hosted by the Database Center for Life Science (DBCLS) and Computational Biology Research Center (CBRC) and was held in Tokyo from February 11th to 15th, 2008. In this report we highlight the work accomplished and the common issues arisen from this event, including the standardization of data exchange formats and services in the emerging fields of glycoinformatics, biological interaction networks, text mining, and phyloinformatics. In addition, common shared object development based on BioSQL, as well as technical challenges in large data management, asynchronous services, and security are discussed. Consequently, we improved interoperability of web services in several fields, however, further cooperation among major database centers and continued collaborative efforts between service providers and software developers are still necessary for an effective advance in bioinformatics web service technologies.Item Open Access Towards a genetic theory for the evolution of the sex ratio II. Haplodiploid and diploid models with sibling and parental control of the brood sex ratio and brood size(Theoretical Population Biology, 1981-01-01) Uyenoyama, MK; Bengtsson, BOPopulation genetic models involving sister, brother, and father control of the brood sex ratio and brood size in both the haplodiploid and diploid cases are constructed and analyzed. The results are interpreted in light of the verbal theories which predict the evolution of the sex ratio to a value which is proportional to the ratio of relatedness of the controlling members of the family to males and to females produced in the brood. In our models, the sex ratio in a certain class of polymorphic equilibria evolves to equal investment in males and females in those cases where the controlling members of the family are symmetrically related to males and females as predicted by the verbal theory. However, the sex ratio in the case of sister control in haploidiploids does not evolve to 1:3, but rather to a value proportional to the ratio of the regression coefficients of additive genotypes. Even so, the predicted sex ratio, which is proportional to 1:3, is in fact an "ESS" in the sense that fixation of a genotype specifying that sex ratio is resistant to the initial increase of all other genotypes. © 1981.