Browsing by Subject "Optics and Photonics"

Now showing 1 - 8 of 8

Open Access
Automatic segmentation of seven retinal layers in SDOCT images congruent with expert manual segmentation.
(Opt Express, 2010-08-30) Chiu, SJ; Li, XT; Nicholas, P; Toth, CA; Izatt, JA; Farsiu, S
Segmentation of anatomical and pathological structures in ophthalmic images is crucial for the diagnosis and study of ocular diseases. However, manual segmentation is often a time-consuming and subjective process. This paper presents an automatic approach for segmenting retinal layers in Spectral Domain Optical Coherence Tomography images using graph theory and dynamic programming. Results show that this method accurately segments eight retinal layer boundaries in normal adult eyes more closely to an expert grader as compared to a second expert grader.
Open Access
Complex k band diagrams of 3D metamaterial/photonic crystals.
(Opt Express, 2011-09-26) Fietz, Chris; Urzhumov, Yaroslav; Shvets, Gennady
A finite element method (FEM) for solving a complex valued k(ω) vs. ω dispersion curve of a 3D metamaterial/photonic crystal system is presented. This 3D method is a generalization of a previously reported 2D eigenvalue method [Opt. Express 15, 9681 (2007)]. This method is particularly convenient for analyzing periodic systems containing dispersive (e.g., plasmonic) materials, for computing isofrequency surfaces in the k-space, and for calculating the decay length of the evanescent waves. Two specific examples are considered: a photonic crystal comprised of dielectric spheres and a plasmonic fishnet structure. Hybridization and avoided crossings between Mie resonances and propagating modes are numerically demonstrated. Negative index propagation of four electromagnetic modes distinguished by their symmetry is predicted for the plasmonic fishnets. By calculating the isofrequency contours, we also demonstrate that the fishnet structure is a hyperbolic medium.
Open Access
Compressive holography.
(2012) Lim, Se Hoon
Compressive holography estimates images from incomplete data by using sparsity priors. Compressive holography combines digital holography and compressive sensing. Digital holography consists of computational image estimation from data captured by an electronic focal plane array. Compressive sensing enables accurate data reconstruction by prior knowledge on desired signal. Computational and optical co-design optimally supports compressive holography in the joint computational and optical domain. This dissertation explores two examples of compressive holography : estimation of 3D tomographic images from 2D data and estimation of images from under sampled apertures. Compressive holography achieves single shot holographic tomography using decompressive inference. In general, 3D image reconstruction suffers from underdetermined measurements with a 2D detector. Specifically, single shot holographic tomography shows the uniqueness problem in the axial direction because the inversion is ill-posed. Compressive sensing alleviates the ill-posed problem by enforcing some sparsity constraints. Holographic tomography is applied for video-rate microscopic imaging and diffuse object imaging. In diffuse object imaging, sparsity priors are not valid in coherent image basis due to speckle. So incoherent image estimation is designed to hold the sparsity in incoherent image basis by support of multiple speckle realizations. High pixel count holography achieves high resolution and wide field-of-view imaging. Coherent aperture synthesis can be one method to increase the aperture size of a detector. Scanning-based synthetic aperture confronts a multivariable global optimization problem due to time-space measurement errors. A hierarchical estimation strategy divides the global problem into multiple local problems with support of computational and optical co-design. Compressive sparse aperture holography can be another method. Compressive sparse sampling collects most of significant field information with a small fill factor because object scattered fields are locally redundant. Incoherent image estimation is adopted for the expanded modulation transfer function and compressive reconstruction.
Open Access
Enhancing imaging systems using transformation optics.
(Opt Express, 2010-09-27) Smith, David R; Urzhumov, Yaroslav; Kundtz, Nathan B; Landy, Nathan I
We apply the transformation optical technique to modify or improve conventional refractive and gradient index optical imaging devices. In particular, when it is known that a detector will terminate the paths of rays over some surface, more freedom is available in the transformation approach, since the wave behavior over a large portion of the domain becomes unimportant. For the analyzed configurations, quasi-conformal and conformal coordinate transformations can be used, leading to simplified constitutive parameter distributions that, in some cases, can be realized with isotropic index; index-only media can be low-loss and have broad bandwidth. We apply a coordinate transformation to flatten a Maxwell fish-eye lens, forming a near-perfect relay lens; and also flatten the focal surface associated with a conventional refractive lens, such that the system exhibits an ultra-wide field-of-view with reduced aberration.
Open Access
Facet-embedded thin-film III-V edge-emitting lasers integrated with SU-8 waveguides on silicon.
(Opt Lett, 2010-10-15) Palit, Sabarni; Kirch, Jeremy; Huang, Mengyuan; Mawst, Luke; Jokerst, Nan Marie
A thin-film InGaAs/GaAs edge-emitting single-quantum-well laser has been integrated with a tapered multimode SU-8 waveguide onto an Si substrate. The SU-8 waveguide is passively aligned to the laser using mask-based photolithography, mimicking electrical interconnection in Si complementary metal-oxide semiconductor, and overlaps one facet of the thin-film laser for coupling power from the laser to the waveguide. Injected threshold current densities of 260A/cm(2) are measured with the reduced reflectivity of the embedded laser facet while improving single mode coupling efficiency, which is theoretically simulated to be 77%.
Open Access
Generalized sampling using a compound-eye imaging system for multi-dimensional object acquisition.
(Opt Express, 2010-08-30) Horisaki, Ryoichi; Choi, Kerkil; Hahn, Joonku; Tanida, Jun; Brady, David J
In this paper, we propose generalized sampling approaches for measuring a multi-dimensional object using a compact compound-eye imaging system called thin observation module by bound optics (TOMBO). This paper shows the proposed system model, physical examples, and simulations to verify TOMBO imaging using generalized sampling. In the system, an object is modulated and multiplied by a weight distribution with physical coding, and the coded optical signal is integrated on to a detector array. A numerical estimation algorithm employing a sparsity constraint is used for object reconstruction.
Open Access
Rapid ratiometric determination of hemoglobin concentration using UV-VIS diffuse reflectance at isosbestic wavelengths.
(Opt Express, 2010-08-30) Phelps, Janelle E; Vishwanath, Karthik; Chang, Vivide TC; Ramanujam, Nirmala
We developed a ratiometric method capable of estimating total hemoglobin concentration from optically measured diffuse reflectance spectra. The three isosbestic wavelength ratio pairs that best correlated to total hemoglobin concentration independent of saturation and scattering were 545/390, 452/390, and 529/390 nm. These wavelength pairs were selected using forward Monte Carlo simulations which were used to extract hemoglobin concentration from experimental phantom measurements. Linear regression coefficients from the simulated data were directly applied to the phantom data, by calibrating for instrument throughput using a single phantom. Phantoms with variable scattering and hemoglobin saturation were tested with two different instruments, and the average percent errors between the expected and ratiometrically-extracted hemoglobin concentration were as low as 6.3%. A correlation of r = 0.88 between hemoglobin concentration extracted using the 529/390 nm isosbestic ratio and a scalable inverse Monte Carlo model was achieved for in vivo dysplastic cervical measurements (hemoglobin concentrations have been shown to be diagnostic for the detection of cervical pre-cancer by our group). These results indicate that use of such a simple ratiometric method has the potential to be used in clinical applications where tissue hemoglobin concentrations need to be rapidly quantified in vivo.
Open Access
Simultaneous two-wavelength transmission quantitative phase microscopy with a color camera.
(Opt Lett, 2010-08-01) Rinehart, Matthew T; Shaked, Natan T; Jenness, Nathan J; Clark, Robert L; Wax, Adam
We present a quantitative phase microscopy method that uses a Bayer mosaic color camera to simultaneously acquire off-axis interferograms in transmission mode at two distinct wavelengths. Wrapped phase information is processed using a two-wavelength algorithm to extend the range of the optical path delay measurements that can be detected using a single temporal acquisition. We experimentally demonstrate this technique by acquiring the phase profiles of optically clear microstructures without 2pi ambiguities. In addition, the phase noise contribution arising from spectral channel crosstalk on the color camera is quantified.