Browsing by Subject "Skull"
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Item Open Access Biogeography in deep time - What do phylogenetics, geology, and paleoclimate tell us about early platyrrhine evolution?(Mol Phylogenet Evol, 2015-01) Kay, Richard FrederickMolecular data have converged on a consensus about the genus-level phylogeny of extant platyrrhine monkeys, but for most extinct taxa and certainly for those older than the Pleistocene we must rely upon morphological evidence from fossils. This raises the question as to how well anatomical data mirror molecular phylogenies and how best to deal with discrepancies between the molecular and morphological data as we seek to extend our phylogenies to the placement of fossil taxa. Here I present parsimony-based phylogenetic analyses of extant and fossil platyrrhines based on an anatomical dataset of 399 dental characters and osteological features of the cranium and postcranium. I sample 16 extant taxa (one from each platyrrhine genus) and 20 extinct taxa of platyrrhines. The tree structure is constrained with a "molecular scaffold" of extant species as implemented in maximum parsimony using PAUP with the molecular-based 'backbone' approach. The data set encompasses most of the known extinct species of platyrrhines, ranging in age from latest Oligocene (∼26 Ma) to the Recent. The tree is rooted with extant catarrhines, and Late Eocene and Early Oligocene African anthropoids. Among the more interesting patterns to emerge are: (1) known early platyrrhines from the Late Oligocene through Early Miocene (26-16.5Ma) represent only stem platyrrhine taxa; (2) representatives of the three living platyrrhine families first occur between 15.7 Ma and 13.5 Ma; and (3) recently extinct primates from the Greater Antilles (Cuba, Jamaica, Hispaniola) are sister to the clade of extant platyrrhines and may have diverged in the Early Miocene. It is probable that the crown platyrrhine clade did not originate before about 20-24 Ma, a conclusion consistent with the phylogenetic analysis of fossil taxa presented here and with recent molecular clock estimates. The following biogeographic scenario is consistent with the phylogenetic findings and climatic and geologic evidence: Tropical South America has been a center for platyrrhine diversification since platyrrhines arrived on the continent in the middle Cenozoic. Platyrrhines dispersed from tropical South America to Patagonia at ∼25-24 Ma via a "Paraná Portal" through eastern South America across a retreating Paranense Sea. Phylogenetic bracketing suggests Antillean primates arrived via a sweepstakes route or island chain from northern South America in the Early Miocene, not via a proposed land bridge or island chain (GAARlandia) in the Early Oligocene (∼34 Ma). Patagonian and Antillean platyrrhines went extinct without leaving living descendants, the former at the end of the Early Miocene and the latter within the past six thousand years. Molecular evidence suggests crown platyrrhines arrived in Central America by crossing an intermittent connection through the Isthmus of Panama at or after 3.5Ma. Any more ancient Central American primates, should they be discovered, are unlikely to have given rise to the extant Central American taxa in situ.Item Open Access Evolution, Development, and Morphology of Cetacean Skull Novelties(2019) Roston, Rachel A.Novelty presents a paradox in evolutionary biology. Novel features appear to be qualitatively unique to a specific type of organism, but historical continuity requires that some common form must have pre-existed them. This dissertation focuses on the morphology and development of three inter-related evolutionary novelties of cetacean skulls: telescoping, the blowhole, and extensive maxillo-frontal overlap. To investigate these novelties, museum specimens and skulls collected from stranded dolphins were studied using computed tomography, morphometrics, and histological methods. The first part of this dissertation sets an evolutionary-developmental framework for empirical study of skull telescoping, defined as extensive bone overlap and shortened maxillo-occipital distance (Chapter 2). The following two chapters (3 and 4) identify distinct ontogenetic changes that contribute to reorientation of the blowhole in a dolphin species and the fin whale. Lastly, the maxillo-frontal in the bottlenose dolphin was characterized using computed tomography and histological methods (Chapter 5).
Item Open Access First virtual endocasts of adapiform primates.(Journal of human evolution, 2016-10) Harrington, Arianna R; Silcox, Mary T; Yapuncich, Gabriel S; Boyer, Doug M; Bloch, Jonathan IWell-preserved crania of notharctine adapiforms from the Eocene of North America provide the best direct evidence available for inferring neuroanatomy and encephalization in early euprimates (crown primates). Virtual endocasts of the notharctines Notharctus tenebrosus (n = 3) and Smilodectes gracilis (n = 4) from the middle Eocene Bridger formation of Wyoming, and the late Eocene European adapid adapiform Adapis parisiensis (n = 1), were reconstructed from high-resolution X-ray computed tomography (CT) data. While the three species share many neuroanatomical similarities differentiating them from plesiadapiforms (stem primates) and extant euprimates, our sample of N. tenebrosus displays more variation than that of S. gracilis, possibly related to differences in the patterns of cranial sexual dimorphism or within-lineage evolution. Body masses predicted from associated teeth suggest that N. tenebrosus was larger and had a lower encephalization quotient (EQ) than S. gracilis, despite their close relationship and similar inferred ecologies. Meanwhile, body masses predicted from cranial length of the same specimens suggest that the two species were more similar, with overlapping body mass and EQ, although S. gracilis exhibits a range of EQs shifted upwards relative to that of N. tenebrosus. While associated data from other parts of the skeleton are mostly lacking for specimens included in this study, measurements for unassociated postcrania attributed to these species yield body mass and EQ estimates that are also more similar to each other than those based on teeth. Regardless of the body mass prediction method used, results suggest that the average EQ of adapiforms was similar to that of plesiadapiforms, only overlapped the lower quadrant for the range of extant strepsirrhines, and did not overlap with the range of extant haplorhines. However, structural changes evident in these endocasts suggest that early euprimates relied more on vision than olfaction relative to plesiadapiforms, despite having relatively small endocranial volumes compared to extant taxa.Item Open Access Identification of Chiari Type I Malformation subtypes using whole genome expression profiles and cranial base morphometrics.(BMC medical genomics, 2014-06) Markunas, Christina A; Lock, Eric; Soldano, Karen; Cope, Heidi; Ding, Chien-Kuang C; Enterline, David S; Grant, Gerald; Fuchs, Herbert; Ashley-Koch, Allison E; Gregory, Simon GBackground
Chiari Type I Malformation (CMI) is characterized by herniation of the cerebellar tonsils through the foramen magnum at the base of the skull, resulting in significant neurologic morbidity. As CMI patients display a high degree of clinical variability and multiple mechanisms have been proposed for tonsillar herniation, it is hypothesized that this heterogeneous disorder is due to multiple genetic and environmental factors. The purpose of the present study was to gain a better understanding of what factors contribute to this heterogeneity by using an unsupervised statistical approach to define disease subtypes within a case-only pediatric population.Methods
A collection of forty-four pediatric CMI patients were ascertained to identify disease subtypes using whole genome expression profiles generated from patient blood and dura mater tissue samples, and radiological data consisting of posterior fossa (PF) morphometrics. Sparse k-means clustering and an extension to accommodate multiple data sources were used to cluster patients into more homogeneous groups using biological and radiological data both individually and collectively.Results
All clustering analyses resulted in the significant identification of patient classes, with the pure biological classes derived from patient blood and dura mater samples demonstrating the strongest evidence. Those patient classes were further characterized by identifying enriched biological pathways, as well as correlated cranial base morphological and clinical traits.Conclusions
Our results implicate several strong biological candidates warranting further investigation from the dura expression analysis and also identified a blood gene expression profile corresponding to a global down-regulation in protein synthesis.Item Open Access Macroevolution of Primate Skull Shape: Combining Geometric Morphometrics and Phylogenetic Comparative Methods(2018) Griffin, Randi HeesooPrimates span incredible behavioral and ecological diversity, and this diversity is reflected in the shape of the skull. This dissertation asks two questions surrounding the evolution of primate skull shape: 1) what are the macroevolutionary correlates of primate skull shape? And 2) what is the pattern of phenotypic integration in the primate skull at a macroevolutionary scale? To address these questions, I compiled a broad comparative dataset of anatomical landmarks identified from 3D scans of primate skulls and analyzed this data using statistical methods that combine geometric morphometrics and phylogenetic comparative methods. To investigate the macroevolutionary correlates of skull shape, I used multivariate phylogenetic generalized linear models to test for relationships between skull shape and several variables that are predicted to be correlated with skull shape: allometry, typical diet, tree gouging behavior, activity pattern, and sexual dimorphism. I found strong phylogenetic signal for primate skull shape, confirming the need for phylogenetic comparative methods. Allometry was a significant predictor of skull shape, with larger primates having relatively small, convergent orbits, and anteroposteriorly short skulls compared to small primates. Sexual dimorphism was associated with a dramatically lengthened rostrum, probably to facilitate a large gape in aggressive displays. Folivory was associated with deeper mandibles, which may improve mechanical advantage and strain resistance. To investigate patterns of phenotypic integration in the skull, I performed hierarchical clustering analyses on phylogenetically corrected inter-landmark covariance matrices. In contrast to previous research, I did not find evidence for distinct phenotypic modules in the primate skull, and I argue that this discrepancy is due to methodological shortcomings of past research that biased results towards identifying different anatomical regions as discrete modules. This dissertation represents one of the first investigations of primate skull shape at a macroevolutionary scale, and demonstrates that the combination of geometric morphometrics and phylogenetic comparative methods can yield novel insights into evolutionary morphology.
Item Open Access Oldest known cranium of a juvenile New World monkey (Early Miocene, Patagonia, Argentina): implications for the taxonomy and the molar eruption pattern of early platyrrhines.(J Hum Evol, 2014-09) Perry, Jonathan MG; Kay, Richard F; Vizcaíno, Sergio F; Bargo, M SusanaA juvenile cranium of Homunculus patagonicus Ameghino, 1891a from the late Early Miocene of Santa Cruz Province (Argentina) provides the first evidence of developing cranial anatomy for any fossil platyrrhine. The specimen preserves the rostral part of the cranium with deciduous and permanent alveoli and teeth. The dental eruption sequence in the new specimen and a reassessment of eruption patterns in living and fossil platyrrhines suggest that the ancestral platyrrhine pattern of tooth replacement was for the permanent incisors to erupt before M(1), not an accelerated molar eruption (before the incisors) as recently proposed. Two genera and species of Santacrucian monkeys are now generally recognized: H. patagonicus Ameghino, 1891a and Killikaike blakei Tejedor et al., 2006. Taxonomic allocation of Santacrucian monkeys to these species encounters two obstacles: 1) the (now lost) holotype and a recently proposed neotype of H. patagonicus are mandibles from different localities and different geologic members of the Santa Cruz Formation, separated by approximately 0.7 million years, whereas the holotype of K. blakei is a rostral part of a cranium without a mandible; 2) no Santacrucian monkey with associated cranium and mandible has ever been found. Bearing in mind these uncertainties, our examination of the new specimen as well as other cranial specimens of Santacrucian monkeys establishes the overall dental and cranial similarity between the holotype of Killikaike blakei, adult cranial material previously referred to H. patagonicus, and the new juvenile specimen. This leads us to conclude that Killikaike blakei is a junior subjective synonym of H. patagonicus.Item Open Access Preliminary notes on a newly discovered skull of the extinct monkey Antillothrix from Hispaniola and the origin of the Greater Antillean monkeys.(J Hum Evol, 2011-01) Kay, RF; Hunt, KD; Beeker, CD; Conrad, GW; Johnson, CC; Keller, JItem Open Access Stem members of Platyrrhini are distinct from catarrhines in at least one derived cranial feature.(Journal of human evolution, 2016-11) Fulwood, Ethan L; Boyer, Doug M; Kay, Richard FThe pterion, on the lateral aspect of the cranium, is where the zygomatic, frontal, sphenoid, squamosal, and parietal bones approach and contact. The configuration of these bones distinguishes New and Old World anthropoids: most extant platyrrhines exhibit contact between the parietal and zygomatic bones, while all known catarrhines exhibit frontal-alisphenoid contact. However, it is thought that early stem-platyrrhines retained the apparently primitive catarrhine condition. Here we re-evaluate the condition of key fossil taxa using μCT (micro-computed tomography) imaging. The single known specimen of Tremacebus and an adult cranium of Antillothrix exhibit the typical platyrrhine condition of parietal-zygomatic contact. The same is true of one specimen of Homunculus, while a second specimen has the 'catarrhine' condition. When these new data are incorporated into an ancestral state reconstruction, they support the conclusion that pterion frontal-alisphenoid contact characterized the last common ancestor of crown anthropoids and that contact between the parietal and zygomatic is a synapomorphy of Platyrrhini.Item Open Access Studies of the Human Head from Neonate to Adult: An Inertial, Geometrical and Structural Analysis with Comparisons to the ATD Head(2011) Loyd, Andre MatthewChild head injury is a very costly problem, both in terms of morbidity/mortality and direct medical costs. In fact, it is the leading cause of death and disability for those in the United States under age 18-years-old. Currently, head injury in children ages newborn to 19-years-old is responsible for 7500 deaths per year--30% of all childhood deaths in the United States. Given its importance and effect on the population, the study of pediatric head injury is greatly hindered by the lack of available pediatric post mortem human specimen (PMHS) data. As a substitute for PMHS testing, anthropometric test devices (ATDs) and finite element models (FEMs) have been developed to model the head. However, there is a dearth of data for the design and validation of these models.
The goal of this study was to use pediatric PMHSs to both advance the study of pediatric head injury and to provide validation data for ATD and finite element head models. 14 pediatric heads, 8 adult heads, and 6 ATD heads were studied to obtain geometrical, inertial, structural stiffness, and impact properties. The computational tomography (CT) method was used on pediatric heads to get inertial properties, and clinical CT scans were used to develop average head and skull contours for 12 different age groups. To obtain impact properties, the heads were dropped onto a rigid plate from 15cm and 30cm, and the acceleration-time pulses were analyzed to obtain acceleration HIC and other impact properties. The heads were then placed between two aluminum plates and compressed at four different rates to obtain structural stiffness values. Using the PMHS results, the ATD heads were compared against age-matched human heads, and the scaling rules used for ATD production were tested for accuracy.
The study found that between the ages of 5-months-old and 22-months-old, the human head was susceptible to fracture from drops as low as 15cm. The structural stiffness of the human head was shown to increase by three orders of magnitude from neonate to adult. For the impact properties, the human head's peak acceleration and head injury criteria increased with age, while the human head's pulse duration and coefficient of restitution decreased with age. The 50th percentile Hybrid III head was found to adequately model the response of the adult head for multiple head impact locations, while the 3-year-old Q3 child ATD was found to be too stiff during impact. Overall, this study provides novel data that can be directly applied to pediatric head injury curves, and pediatric ATD and finite element head models.