Browsing by Subject "brain evolution"
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Item Open Access Brain evolution by brain pathway duplication.(Philos Trans R Soc Lond B Biol Sci, 2015-12-19) Chakraborty, Mukta; Jarvis, Erich DUnderstanding the mechanisms of evolution of brain pathways for complex behaviours is still in its infancy. Making further advances requires a deeper understanding of brain homologies, novelties and analogies. It also requires an understanding of how adaptive genetic modifications lead to restructuring of the brain. Recent advances in genomic and molecular biology techniques applied to brain research have provided exciting insights into how complex behaviours are shaped by selection of novel brain pathways and functions of the nervous system. Here, we review and further develop some insights to a new hypothesis on one mechanism that may contribute to nervous system evolution, in particular by brain pathway duplication. Like gene duplication, we propose that whole brain pathways can duplicate and the duplicated pathway diverge to take on new functions. We suggest that one mechanism of brain pathway duplication could be through gene duplication, although other mechanisms are possible. We focus on brain pathways for vocal learning and spoken language in song-learning birds and humans as example systems. This view presents a new framework for future research in our understanding of brain evolution and novel behavioural traits.Item Open Access Endocranial volume and shape variation in early anthropoid evolution(2014) Allen, Kari LeighFossil taxa are crucial to studies of brain evolution, as they allow us to identify evolutionary trends in relative brain size and brain shape that may not otherwise be identifiable in comparative studies using only extant taxa, owing to multiple events of parallel encephalization among primate clades. This thesis combines indirect and direct approaches to understanding primate evolution, by evaluating variation in the endocranial morphology of extant primates and their fossil representatives. I use a comparative approach to examine the relationships between interspecific adult endocranial volume and shape, and brain evolution and cranial form among extant primate clades and their fossil representatives. The associations are evaluated via phylogenetically informed statistics perfomed on volumetric measurements and three-dimensional geometric morphometric analyses of virtual endocasts constructed from micro-CT scans of primate crania. Fossil taxa included in these analyses are: 1) anthropoids Parapithecus, Aegyptopithecus (Early Oligocene, Egypt), Homunculus and Tremacebus (Early Miocene, Argentina), and 2) Eocene euprimates Adapis and Leptadapis (Eocene adapoids, France), and the Rooneyia (Eocene omomyoid, Texas).
The first part of this work (Chapter 2) explores variation in residual mass of brain components (taken from the literature) among primates, and evaluates the correlated evolution of encephalization and brain proportions with endocast shape, quantified via three-dimensional geometric morphometric techniques. Analyses reveal a broad range of variation in endocast shape among primates. Endocast shape is influenced by a complex array of factors, including phylogeny, body size, encephalization, and brain proportions (residual mass of brain components). The analysis supports previous research, which concludes that anthropoids and tarsiers (Haplorhini) share the enlargement of several key brain regions including the neocortex and visual systems, and a reduction of the olfactory system. Anthropoids further differ from strepsirrhines in endocranial features associated with encephalization--a more flexed brain base, an inferiorly deflected olfactory fossa--and those associated with brain proportions--a small olfactory fossa, and a more caudally extended cerebrum that extends posteriorly past the cerebellar poles. Tarsiers are unique in having a mediolaterally broad and rostro-caudally short endocast with an attenuated anterior and middle cranial fossae. This morphology is likely related to the extreme orbital enlargement in this taxon, which limits anterior expansion of the endocranium. Finally, despite the correlation between residual endocranial volume and endocast shape among modern primates, early anthropoid fossils demonstrate a disconnect between these factors in sharing key features of endocast shape with extant anthropoids at a relatively small brain size.
The second part of this thesis (Chapter 3) explores the relationship between craniofacial organization--cranial base angle, facial size, facial hafting--and encephalization via the lens of the Spatial Constraints and Facial Packing Hypotheses. These hypotheses predict that interspecific adult variation in encephalization correlates with endocranial shape such that a larger brain for a given body size will be more "globular" or spherical in shape. These hypotheses futher predict that basicranial angle covaries with encephalization and that the relative size of the endocranium and facial skeleton will have an antagonistic effect on basicranial angle and facial hafting. Results show that various measures of globularity have inconsistent and weak relationships to phylogeny, encephalization, and basicranial flexion, owing to a diversity of clade-specific scaling patterns between the maximum length, breadth, and width of the endocast. Among extant primates, there is weak but significant evidence to suggest that both facial size and encephalization influence variation in basicranial flexion. Considering the fossil specimens in isolation, their relative ranks in encephalization, basicranial flexion, and midline facial size and shape follow the pattern expected from the Spatial and Facial Packing Hypotheses outlined above; however, relative to modern species, the early fossil anthropoids have more flexed cranial bases and shorter facial skeletons at much smaller level of encephalization than seen in modern anthropoids.
Together, the extant data suggest a moderately conserved pattern of correlated evolution among endocranial size, endocranial shape, brain proportions, and craniofacial organization, which may explain differences in endocranial and facial shape between extant strepsirrhine and anthropoid primates; however, the fossil record for early anthropoid evolution demonstrates that a shift towards key anthropoid-like traits of the endocranium, basicranium, and facial skeleton were initiated early in anthropoid evolution, with subsequent encephalization occurring within and among members of this clade. Thus, these anthropoid cranial traits evolved in tandem with changes in the relative size of brain components, rather than absolute or relative brain size alone. Basicranial flexion, facial length and orientation are influenced by both: 1) shifts in endocranial shape associated with changes in brain proportion--accounting for the initiation of the anthropoid-like craniofacial plan early in the evolution of the clade--and 2) encephalization, which influenced subsequent morphological divergence among extant anthropoid groups.
Item Restricted Global view of the functional molecular organization of the avian cerebrum: mirror images and functional columns.(J Comp Neurol, 2013-11) Jarvis, Erich D; Yu, Jing; Rivas, Miriam V; Horita, Haruhito; Feenders, Gesa; Whitney, Osceola; Jarvis, Syrus C; Jarvis, Electra R; Kubikova, Lubica; Puck, Ana EP; Siang-Bakshi, Connie; Martin, Suzanne; McElroy, Michael; Hara, Erina; Howard, Jason; Pfenning, Andreas; Mouritsen, Henrik; Chen, Chun-Chun; Wada, KazuhiroBased on quantitative cluster analyses of 52 constitutively expressed or behaviorally regulated genes in 23 brain regions, we present a global view of telencephalic organization of birds. The patterns of constitutively expressed genes revealed a partial mirror image organization of three major cell populations that wrap above, around, and below the ventricle and adjacent lamina through the mesopallium. The patterns of behaviorally regulated genes revealed functional columns of activation across boundaries of these cell populations, reminiscent of columns through layers of the mammalian cortex. The avian functionally regulated columns were of two types: those above the ventricle and associated mesopallial lamina, formed by our revised dorsal mesopallium, hyperpallium, and intercalated hyperpallium; and those below the ventricle, formed by our revised ventral mesopallium, nidopallium, and intercalated nidopallium. Based on these findings and known connectivity, we propose that the avian pallium has four major cell populations similar to those in mammalian cortex and some parts of the amygdala: 1) a primary sensory input population (intercalated pallium); 2) a secondary intrapallial population (nidopallium/hyperpallium); 3) a tertiary intrapallial population (mesopallium); and 4) a quaternary output population (the arcopallium). Each population contributes portions to columns that control different sensory or motor systems. We suggest that this organization of cell groups forms by expansion of contiguous developmental cell domains that wrap around the lateral ventricle and its extension through the middle of the mesopallium. We believe that the position of the lateral ventricle and its associated mesopallium lamina has resulted in a conceptual barrier to recognizing related cell groups across its border, thereby confounding our understanding of homologies with mammals.Item Open Access Molecular profiling of the developing avian telencephalon: regional timing and brain subdivision continuities.(J Comp Neurol, 2013-11) Chen, Chun-Chun; Winkler, Candace M; Pfenning, Andreas R; Jarvis, Erich DIn our companion study (Jarvis et al. [2013] J Comp Neurol. doi: 10.1002/cne.23404) we used quantitative brain molecular profiling to discover that distinct subdivisions in the avian pallium above and below the ventricle and the associated mesopallium lamina have similar molecular profiles, leading to a hypothesis that they may form as continuous subdivisions around the lateral ventricle. To explore this hypothesis, here we profiled the expression of 16 genes at eight developmental stages. The genes included those that define brain subdivisions in the adult and some that are also involved in brain development. We found that phyletic hierarchical cluster and linear regression network analyses of gene expression profiles implicated single and mixed ancestry of these brain regions at early embryonic stages. Most gene expression-defined pallial subdivisions began as one ventral or dorsal domain that later formed specific folds around the lateral ventricle. Subsequently a clear ventricle boundary formed, partitioning them into dorsal and ventral pallial subdivisions surrounding the mesopallium lamina. These subdivisions each included two parts of the mesopallium, the nidopallium and hyperpallium, and the arcopallium and hippocampus, respectively. Each subdivision expression profile had a different temporal order of appearance, similar in timing to the order of analogous cell types of the mammalian cortex. Furthermore, like the mammalian pallium, expression in the ventral pallial subdivisions became distinct during prehatch development, whereas the dorsal portions did so during posthatch development. These findings support the continuum hypothesis of avian brain subdivision development around the ventricle and influence hypotheses on homologies of the avian pallium with other vertebrates.Item Open Access NSF workshop report: discovering general principles of nervous system organization by comparing brain maps across species.(J Comp Neurol, 2014-05-01) Striedter, Georg F; Belgard, T Grant; Chen, Chun-Chun; Davis, Fred P; Finlay, Barbara L; Güntürkün, Onur; Hale, Melina E; Harris, Julie A; Hecht, Erin E; Hof, Patrick R; Hofmann, Hans A; Holland, Linda Z; Iwaniuk, Andrew N; Jarvis, Erich D; Karten, Harvey J; Katz, Paul S; Kristan, William B; Macagno, Eduardo R; Mitra, Partha P; Moroz, Leonid L; Preuss, Todd M; Ragsdale, Clifton W; Sherwood, Chet C; Stevens, Charles F; Stüttgen, Maik C; Tsumoto, Tadaharu; Wilczynski, WalterEfforts to understand nervous system structure and function have received new impetus from the federal Brain Research through Advancing Innovative Neurotechnologies (BRAIN) Initiative. Comparative analyses can contribute to this effort by leading to the discovery of general principles of neural circuit design, information processing, and gene-structure-function relationships that are not apparent from studies on single species. We here propose to extend the comparative approach to nervous system 'maps' comprising molecular, anatomical, and physiological data. This research will identify which neural features are likely to generalize across species, and which are unlikely to be broadly conserved. It will also suggest causal relationships between genes, development, adult anatomy, physiology, and, ultimately, behavior. These causal hypotheses can then be tested experimentally. Finally, insights from comparative research can inspire and guide technological development. To promote this research agenda, we recommend that teams of investigators coalesce around specific research questions and select a set of 'reference species' to anchor their comparative analyses. These reference species should be chosen not just for practical advantages, but also with regard for their phylogenetic position, behavioral repertoire, well-annotated genome, or other strategic reasons. We envision that the nervous systems of these reference species will be mapped in more detail than those of other species. The collected data may range from the molecular to the behavioral, depending on the research question. To integrate across levels of analysis and across species, standards for data collection, annotation, archiving, and distribution must be developed and respected. To that end, it will help to form networks or consortia of researchers and centers for science, technology, and education that focus on organized data collection, distribution, and training. These activities could be supported, at least in part, through existing mechanisms at NSF, NIH, and other agencies. It will also be important to develop new integrated software and database systems for cross-species data analyses. Multidisciplinary efforts to develop such analytical tools should be supported financially. Finally, training opportunities should be created to stimulate multidisciplinary, integrative research into brain structure, function, and evolution.