Browsing by Author "Jarvis, ED"

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  • Yu, J; Smith, VA; Wang, PP; Hartemink, AJ; Jarvis, ED (2004-12-12)
    MOTIVATION: Network inference algorithms are powerful computational tools for identifying putative causal interactions among variables from observational data. Bayesian network inference algorithms hold particular promise ...
  • Jarvis, ED; Smith, VA; Wada, K; Rivas, MV; McElroy, M; Smulders, TV; Carninci, P; Hayashizaki, Y; Dietrich, F; Wu, X; McConnell, P; Yu, J; Wang, PP; Hartemink, AJ; Lin, S (2002-12)
    Biological systems by default involve complex components with complex relationships. To decipher how biological systems work, we assume that one needs to integrate information over multiple levels of complexity. The songbird ...
  • Krebs, CJ; Jarvis, ED; Chan, J; Lydon, JP; Ogawa, S; Pfaff, DW (2000-11-07)
    The ventromedial hypothalamus (VMH) plays a central role in the regulation of the female reproductive behavior lordosis, a behavior dependent upon the sequential activation of receptors for the ovarian steroid hormones ...
  • Wada, K; Howard, JT; McConnell, P; Whitney, O; Lints, T; Rivas, MV; Horita, H; Patterson, MA; White, SA; Scharff, C; Haesler, S; Zhao, S; Sakaguchi, H; Hagiwara, M; Shiraki, T; Hirozane-Kishikawa, T; Skene, P; Hayashizaki, Y; Carninci, P; Jarvis, ED (2006-10-10)
    Songbirds have one of the most accessible neural systems for the study of brain mechanisms of behavior. However, neuroethological studies in songbirds have been limited by the lack of high-throughput molecular resources ...
  • Okazaki, Y; Furuno, M; Kasukawa, T; Adachi, J; Bono, H; Kondo, S; Nikaido, I; Osato, N; Saito, R; Suzuki, H; Yamanaka, I; Kiyosawa, H; Yagi, K; Tomaru, Y; Hasegawa, Y; Nogami, A; Schönbach, C; Gojobori, T; Baldarelli, R; Hill, DP; Bult, C; Hume, DA; Quackenbush, J; Schriml, LM; Kanapin, A; Matsuda, H; Batalov, S; Beisel, KW; Blake, JA; Bradt, D; Brusic, V; Chothia, C; Corbani, LE; Cousins, S; Dalla, E; Dragani, TA; Fletcher, CF; Forrest, A; Frazer, KS; Gaasterland, T; Gariboldi, M; Gissi, C; Godzik, A; Gough, J; Grimmond, S; Gustincich, S; Hirokawa, N; Jackson, IJ; Jarvis, ED; Kanai, A; Kawaji, H; Kawasawa, Y; Kedzierski, RM; King, BL; Konagaya, A; Kurochkin, IV; Lee, Y; Lenhard, B; Lyons, PA; Maglott, DR; Maltais, L; Marchionni, L; McKenzie, L; Miki, H; Nagashima, T; Numata, K; Okido, T; Pavan, WJ; Pertea, G; Pesole, G; Petrovsky, N; Pillai, R; Pontius, JU; Qi, D; Ramachandran, S; Ravasi, T; Reed, JC; Reed, DJ; Reid, J; Ring, BZ; Ringwald, M; Sandelin, A; Schneider, C; Semple, CA; Setou, M; Shimada, K; Sultana, R; Takenaka, Y; Taylor, MS; Teasdale, RD; Tomita, M; Verardo, R; Wagner, L; Wahlestedt, C; Wang, Y; Watanabe, Y; Wells, C; Wilming, LG; Wynshaw-Boris, A; Yanagisawa, M; Yang, I; Yang, L; Yuan, Z; Zavolan, M; Zhu, Y; Zimmer, A; Carninci, P; Hayatsu, N; Hirozane-Kishikawa, T; Konno, H; Nakamura, M; Sakazume, N; Sato, K; Shiraki, T; Waki, K; Kawai, J; Aizawa, K; Arakawa, T; Fukuda, S; Hara, A; Hashizume, W; Imotani, K; Ishii, Y; Itoh, M; Kagawa, I; Miyazaki, A; Sakai, K; Sasaki, D; Shibata, K; Shinagawa, A; Yasunishi, A; Yoshino, M; Waterston, R; Lander, ES; Rogers, J; Birney, E; Hayashizaki, Y; FANTOM Consortium; RIKEN Genome Exploration Research Group Phase I & II Team (2002-12-05)
    Only a small proportion of the mouse genome is transcribed into mature messenger RNA transcripts. There is an international collaborative effort to identify all full-length mRNA transcripts from the mouse, and to ensure ...
  • Gustincich, S; Batalov, S; Beisel, KW; Bono, H; Carninci, P; Fletcher, CF; Grimmond, S; Hirokawa, N; Jarvis, ED; Jegla, T; Kawasawa, Y; LeMieux, J; Miki, H; Raviola, E; Teasdale, RD; Tominaga, N; Yagi, K; Zimmer, A; Hayashizaki, Y; Okazaki, Y; RIKEN GER Group; GSL Members (2003-06)
    We analyzed the mouse Representative Transcript and Protein Set for molecules involved in brain function. We found full-length cDNAs of many known brain genes and discovered new members of known brain gene families, including ...
  • Ribeiro, ÂM; Zepeda-Mendoza, ML; Bertelsen, MF; Kristensen, AT; Jarvis, ED; Gilbert, MT; da Fonseca, RR (2015-06-30)
    BACKGROUND: Hemostasis is a defense mechanism that enhances an organism's survival by minimizing blood loss upon vascular injury. In vertebrates, hemostasis has been evolving with the cardio-vascular and hemodynamic systems ...
  • Li, XC; Jarvis, ED; Alvarez-Borda, B; Lim, DA; Nottebohm, F (2000-07-18)
    The high vocal center (HVC) controls song production in songbirds and sends a projection to the robust nucleus of the archistriatum (RA) of the descending vocal pathway. HVC receives new neurons in adulthood. Most of the ...
  • Bradnam, KR; Fass, JN; Alexandrov, A; Baranay, P; Bechner, M; Birol, I; Boisvert, S; Chapman, JA; Chapuis, G; Chikhi, R; Chitsaz, H; Chou, WC; Corbeil, J; Del Fabbro, C; Docking, TR; Durbin, R; Earl, D; Emrich, S; Fedotov, P; Fonseca, NA; Ganapathy, G; Gibbs, RA; Gnerre, S; Godzaridis, E; Goldstein, S; Haimel, M; Hall, G; Haussler, D; Hiatt, JB; Ho, IY; Howard, J; Hunt, M; Jackman, SD; Jaffe, DB; Jarvis, ED; Jiang, H; Kazakov, S; Kersey, PJ; Kitzman, JO; Knight, JR; Koren, S; Lam, TW; Lavenier, D; Laviolette, F; Li, Y; Li, Z; Liu, B; Liu, Y; Luo, R; Maccallum, I; Macmanes, MD; Maillet, N; Melnikov, S; Naquin, D; Ning, Z; Otto, TD; Paten, B; Paulo, OS; Phillippy, AM; Pina-Martins, F; Place, M; Przybylski, D; Qin, X; Qu, C; Ribeiro, FJ; Richards, S; Rokhsar, DS; Ruby, JG; Scalabrin, S; Schatz, MC; Schwartz, DC; Sergushichev, A; Sharpe, T; Shaw, TI; Shendure, J; Shi, Y; Simpson, JT; Song, H; Tsarev, F; Vezzi, F; Vicedomini, R; Vieira, BM; Wang, J; Worley, KC; Yin, S; Yiu, SM; Yuan, J; Zhang, G; Zhang, H; Zhou, S; Korf, IF (2013-07-22)
    BACKGROUND: The process of generating raw genome sequence data continues to become cheaper, faster, and more accurate. However, assembly of such data into high-quality, finished genome sequences remains challenging. Many ...
  • Hara, E; Kubikova, L; Hessler, NA; Jarvis, ED (2009-01-22)
    Social context has been shown to have a profound influence on brain activation in a wide range of vertebrate species. Best studied in songbirds, when males sing undirected song, the level of neural activity and expression ...
  • Jarvis, ED; Güntürkün, O; Bruce, L; Csillag, A; Karten, H; Kuenzel, W; Medina, L; Paxinos, G; Perkel, DJ; Shimizu, T; Striedter, G; Wild, JM; Ball, GF; Dugas-Ford, J; Durand, SE; Hough, GE; Husband, S; Kubikova, L; Lee, DW; Mello, CV; Powers, A; Siang, C; Smulders, TV; Wada, K; White, SA; Yamamoto, K; Yu, J; Reiner, A; Butler, AB; Avian Brain Nomenclature Consortium (2005-02)
    We believe that names have a powerful influence on the experiments we do and the way in which we think. For this reason, and in the light of new evidence about the function and evolution of the vertebrate brain, an ...
  • Zhang, G; Jarvis, ED; Gilbert, MT (2014-12-12)
  • Kubikova, L; Bosikova, E; Cvikova, M; Lukacova, K; Scharff, C; Jarvis, ED (2014-10-13)
    A pallial-basal-ganglia-thalamic-pallial loop in songbirds is involved in vocal motor learning. Damage to its basal ganglia part, Area X, in adult zebra finches has been noted to have no strong effects on song and its ...
  • Jarvis, ED; Ribeiro, S; da Silva, ML; Ventura, D; Vielliard, J; Mello, CV (2000-08-10)
    Hummingbirds have developed a wealth of intriguing features, such as backwards flight, ultraviolet vision, extremely high metabolic rates, nocturnal hibernation, high brain-to-body size ratio and a remarkable species-specific ...
  • Jarvis, ED (2010-12-01)
    This article presents the classic and modern views of avian brain evolution in the context of vertebrate brain evolution. The classical view held that the avian cerebrum along with those of other vertebrates evolved in ...
  • Jarvis, ED (2010-12-01)
    This article presents the vocal and auditory pathways of vocal-learning birds and a hypothesis about their evolution. These pathways control the ability to produce learned song in the few groups of birds that have vocal ...
  • Petkov, CI; Jarvis, ED (2012-12-01)
    Vocal learners such as humans and songbirds can learn to produce elaborate patterns of structurally organized vocalizations, whereas many other vertebrates such as non-human primates and most other bird groups either cannot ...
  • Chakraborty, M; Jarvis, ED (2015-12-19)
    Understanding the mechanisms of evolution of brain pathways for complex behaviours is still in its infancy. Making further advances requires a deeper understanding of brain homologies, novelties and analogies. It also ...
  • Jarvis, ED; Schwabl, H; Ribeiro, S; Mello, CV (1997-05-27)
    To investigate the ecological relevance of brain gene regulation associated with singing behavior in songbirds, we challenged freely ranging song sparrows with conspecific song playbacks within their breeding territories. ...
  • Jarvis, ED (2004-10-01)
    Scientists have a come a long way in their studies of brains and birdsong. The discovery of new neurons in the adult brain has revolutionary implications for medical science. The molecular biology of vocal learning is ...