Now showing items 1-20 of 56

    • A refined model of the genomic basis for phenotypic variation in vertebrate hemostasis. 

      Ribeiro, Ângela M; Zepeda-Mendoza, M Lisandra; Bertelsen, Mads F; Kristensen, Annemarie T; Jarvis, Erich D; Gilbert, M Thomas P; da Fonseca, Rute R (BMC Evol Biol, 2015-06-30)
      BACKGROUND: Hemostasis is a defense mechanism that enhances an organism's survival by minimizing blood loss upon vascular injury. In vertebrates, hemostasis has been evolving with the cardio-vascular and hemodynamic systems ...
    • Avian brains and a new understanding of vertebrate brain evolution. 

      Jarvis, Erich D; Güntürkün, Onur; Bruce, Laura; Csillag, András; Karten, Harvey; Kuenzel, Wayne; Medina, Loreta; ... (30 authors) (Nat Rev Neurosci, 2005-02)
      We believe that names have a powerful influence on the experiments we do and the way in which we think. For this reason, and in the light of new evidence about the function and evolution of the vertebrate brain, an international ...
    • Avian Distribution Patterns and Conservation in Amazonia 

      Vale, Mariana M (2007-10-19)
      In this dissertation, I address the distribution and conservation of the Amazonian avifauna at several different scales. In Chapter 1, I looked at how the spatial bias in ornithological collections affects our understanding ...
    • Avian genomes. A flock of genomes. Introduction. 

      Zhang, Guojie; Jarvis, Erich D; Gilbert, M Thomas P (Science, 2014-12-12)
    • Avianbase: a community resource for bird genomics. 

      Eöry, Lél; Gilbert, M Thomas P; Li, Cai; Li, Bo; Archibald, Alan; Aken, Bronwen L; Zhang, Guojie; ... (10 authors) (Genome Biol, 2015-01-29)
      Giving access to sequence and annotation data for genome assemblies is important because, while facilitating research, it places both assembly and annotation quality under scrutiny, resulting in improvements to both. Therefore ...
    • Behaviourally driven gene expression reveals song nuclei in hummingbird brain. 

      Jarvis, ED; Ribeiro, S; da Silva, ML; Ventura, D; Vielliard, J; Mello, CV (Nature, 2000-08-10)
      Hummingbirds have developed a wealth of intriguing features, such as backwards flight, ultraviolet vision, extremely high metabolic rates, nocturnal hibernation, high brain-to-body size ratio and a remarkable species-specific ...
    • Bird extirpations and community dynamics in an Andean cloud forest over 100 years of land-use change. 

      Palacio, Ruben D; Kattan, Gustavo H; Pimm, Stuart L (Conservation biology : the journal of the Society for Conservation Biology, 2020-06)
      Long-term studies to understand biodiversity changes remain scarce-especially so for tropical mountains. We examined changes from 1911 to 2016 in the bird community of the cloud forest of San Antonio, a mountain ridge in ...
    • Brain evolution by brain pathway duplication. 

      Chakraborty, Mukta; Jarvis, Erich D (Philos Trans R Soc Lond B Biol Sci, 2015-12-19)
      Understanding the mechanisms of evolution of brain pathways for complex behaviours is still in its infancy. Making further advances requires a deeper understanding of brain homologies, novelties and analogies. It also requires ...
    • Brain gene regulation by territorial singing behavior in freely ranging songbirds. 

      Jarvis, ED; Schwabl, H; Ribeiro, S; Mello, CV (Neuroreport, 1997-05-27)
      To investigate the ecological relevance of brain gene regulation associated with singing behavior in songbirds, we challenged freely ranging song sparrows with conspecific song playbacks within their breeding territories. ...
    • China's endemic vertebrates sheltering under the protective umbrella of the giant panda. 

      Li, Binbin V; Pimm, Stuart L (Conservation biology : the journal of the Society for Conservation Biology, 2016-04)
      The giant panda attracts disproportionate conservation resources. How well does this emphasis protect other endemic species? Detailed data on geographical ranges are not available for plants or invertebrates, so we restrict ...
    • Comparative genomics based on massive parallel transcriptome sequencing reveals patterns of substitution and selection across 10 bird species. 

      Künstner, Axel; Wolf, Jochen BW; Backström, Niclas; Whitney, Osceola; Balakrishnan, Christopher N; Day, Lainy; Edwards, Scott V; ... (13 authors) (Mol Ecol, 2010-03)
      Next-generation sequencing technology provides an attractive means to obtain large-scale sequence data necessary for comparative genomic analysis. To analyse the patterns of mutation rate variation and selection intensity ...
    • Comparative genomics reveals insights into avian genome evolution and adaptation. 

      Zhang, Guojie; Li, Cai; Li, Qiye; Li, Bo; Larkin, Denis M; Lee, Chul; Storz, Jay F; ... (107 authors) (Science, 2014-12-12)
      Birds are the most species-rich class of tetrapod vertebrates and have wide relevance across many research fields. We explored bird macroevolution using full genomes from 48 avian species representing all major extant clades. ...
    • Complex evolutionary trajectories of sex chromosomes across bird taxa. 

      Zhou, Qi; Zhang, Jilin; Bachtrog, Doris; An, Na; Huang, Quanfei; Jarvis, Erich D; Gilbert, M Thomas P; ... (8 authors) (Science, 2014-12-12)
      Sex-specific chromosomes, like the W of most female birds and the Y of male mammals, usually have lost most genes owing to a lack of recombination. We analyze newly available genomes of 17 bird species representing the avian ...
    • Convergent differential regulation of parvalbumin in the brains of vocal learners. 

      Hara, Erina; Rivas, Miriam V; Ward, James M; Okanoya, Kazuo; Jarvis, Erich D (PLoS One, 2012)
      Spoken language and learned song are complex communication behaviors found in only a few species, including humans and three groups of distantly related birds--songbirds, parrots, and hummingbirds. Despite their ...
    • Convergent differential regulation of SLIT-ROBO axon guidance genes in the brains of vocal learners. 

      Wang, Rui; Chen, Chun-Chun; Hara, Erina; Rivas, Miriam V; Roulhac, Petra L; Howard, Jason T; Chakraborty, Mukta; ... (9 authors) (J Comp Neurol, 2015-04-15)
      Only a few distantly related mammals and birds have the trait of complex vocal learning, which is the ability to imitate novel sounds. This ability is critical for speech acquisition and production in humans, and is attributed ...
    • Convergent transcriptional specializations in the brains of humans and song-learning birds. 

      Pfenning, Andreas R; Hara, Erina; Whitney, Osceola; Rivas, Miriam V; Wang, Rui; Roulhac, Petra L; Howard, Jason T; ... (25 authors) (Science, 2014-12-12)
      Song-learning birds and humans share independently evolved similarities in brain pathways for vocal learning that are essential for song and speech and are not found in most other species. Comparisons of brain transcriptomes ...
    • Differential expression of glutamate receptors in avian neural pathways for learned vocalization. 

      Wada, Kazuhiro; Sakaguchi, Hironobu; Jarvis, Erich D; Hagiwara, Masatoshi (J Comp Neurol, 2004-08-09)
      Learned vocalization, the substrate for human language, is a rare trait. It is found in three distantly related groups of birds-parrots, hummingbirds, and songbirds. These three groups contain cerebral vocal nuclei for learned ...
    • Differential introgression of a female competitive trait in a hybrid zone between sex-role reversed species. 

      Lipshutz, Sara E; Meier, Joana I; Derryberry, Graham E; Miller, Matthew J; Miller, Matthew J; Seehausen, Ole; Derryberry, Elizabeth P (Evolution; international journal of organic evolution, 2019-02)
      Mating behavior between recently diverged species in secondary contact can impede or promote reproductive isolation. Traditionally, researchers focus on the importance of female mate choice and male-male competition ...
    • Dynamic evolution of base composition: causes and consequences in avian phylogenomics. 

      Nabholz, Benoit; Künstner, Axel; Wang, Rui; Jarvis, Erich D; Ellegren, Hans (Mol Biol Evol, 2011-08)
      Resolving the phylogenetic relationships among birds is a classical problem in systematics, and this is particularly so when it comes to understanding the relationships among Neoaves. Previous phylogenetic inference of birds ...
    • Dynamic evolution of the alpha (α) and beta (β) keratins has accompanied integument diversification and the adaptation of birds into novel lifestyles. 

      Greenwold, Matthew J; Bao, Weier; Jarvis, Erich D; Hu, Haofu; Li, Cai; Gilbert, M Thomas P; Zhang, Guojie; ... (8 authors) (BMC Evol Biol, 2014-12-12)
      BACKGROUND: Vertebrate skin appendages are constructed of keratins produced by multigene families. Alpha (α) keratins are found in all vertebrates, while beta (β) keratins are found exclusively in reptiles and birds. We ...