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BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains.

dc.contributor.author Aerts, J
dc.contributor.author Akune, Y
dc.contributor.author Antezana, E
dc.contributor.author Aoki-Kinoshita, KF
dc.contributor.author Arakawa, K
dc.contributor.author Aranda, B
dc.contributor.author Baran, J
dc.contributor.author Bolleman, J
dc.contributor.author Bonnal, RJ
dc.contributor.author Bono, H
dc.contributor.author Buttigieg, PL
dc.contributor.author Campbell, MP
dc.contributor.author Chen, YA
dc.contributor.author Chiba, H
dc.contributor.author Cock, PJ
dc.contributor.author Cohen, KB
dc.contributor.author Constantin, A
dc.contributor.author Duck, G
dc.contributor.author Dumontier, M
dc.contributor.author Fujisawa, T
dc.contributor.author Fujiwara, T
dc.contributor.author Goto, N
dc.contributor.author Hoehndorf, R
dc.contributor.author Igarashi, Y
dc.contributor.author Itaya, H
dc.contributor.author Ito, M
dc.contributor.author Iwasaki, W
dc.contributor.author Kalaš, M
dc.contributor.author Kano, Y
dc.contributor.author Katayama, T
dc.contributor.author Katoda, T
dc.contributor.author Kawamoto, S
dc.contributor.author Kawano, S
dc.contributor.author Kawashima, S
dc.contributor.author Kim, JD
dc.contributor.author Kim, T
dc.contributor.author Kocbek, S
dc.contributor.author Kokubu, A
dc.contributor.author Komiyama, Y
dc.contributor.author Kotera, M
dc.contributor.author Laibe, C
dc.contributor.author Lapp, Hilmar
dc.contributor.author Lütteke, T
dc.contributor.author Marshall, MS
dc.contributor.author Mori, H
dc.contributor.author Mori, T
dc.contributor.author Morita, M
dc.contributor.author Murakami, K
dc.contributor.author Nakao, M
dc.contributor.author Narimatsu, H
dc.contributor.author Nishide, H
dc.contributor.author Nishimura, Y
dc.contributor.author Nystrom-Persson, J
dc.contributor.author Ogishima, S
dc.contributor.author Okamoto, S
dc.contributor.author Okamura, Y
dc.contributor.author Okuda, S
dc.contributor.author Ono, H
dc.contributor.author Oshita, K
dc.contributor.author Packer, NH
dc.contributor.author Prins, P
dc.contributor.author Ranzinger, R
dc.contributor.author Rocca-Serra, P
dc.contributor.author Sansone, S
dc.contributor.author Sawaki, H
dc.contributor.author Shin, SH
dc.contributor.author Splendiani, A
dc.contributor.author Strozzi, F
dc.contributor.author Tadaka, S
dc.contributor.author Takagi, T
dc.contributor.author Toukach, P
dc.contributor.author Uchiyama, I
dc.contributor.author Umezaki, M
dc.contributor.author Vos, R
dc.contributor.author Wang, Y
dc.contributor.author Whetzel, PL
dc.contributor.author Wilkinson, MD
dc.contributor.author Wu, H
dc.contributor.author Yamada, I
dc.contributor.author Yamaguchi, A
dc.contributor.author Yamamoto, Y
dc.contributor.author Yamasaki, C
dc.contributor.author Yamashita, R
dc.contributor.author York, WS
dc.contributor.author Zmasek, CM
dc.coverage.spatial England
dc.date.accessioned 2015-05-27T18:03:23Z
dc.date.issued 2014-02-05
dc.identifier http://www.ncbi.nlm.nih.gov/pubmed/24495517
dc.identifier 2041-1480-5-5
dc.identifier.uri https://hdl.handle.net/10161/10196
dc.description.abstract The application of semantic technologies to the integration of biological data and the interoperability of bioinformatics analysis and visualization tools has been the common theme of a series of annual BioHackathons hosted in Japan for the past five years. Here we provide a review of the activities and outcomes from the BioHackathons held in 2011 in Kyoto and 2012 in Toyama. In order to efficiently implement semantic technologies in the life sciences, participants formed various sub-groups and worked on the following topics: Resource Description Framework (RDF) models for specific domains, text mining of the literature, ontology development, essential metadata for biological databases, platforms to enable efficient Semantic Web technology development and interoperability, and the development of applications for Semantic Web data. In this review, we briefly introduce the themes covered by these sub-groups. The observations made, conclusions drawn, and software development projects that emerged from these activities are discussed.
dc.language eng
dc.relation.ispartof J Biomed Semantics
dc.relation.isversionof 10.1186/2041-1480-5-5
dc.title BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains.
dc.type Journal article
pubs.author-url http://www.ncbi.nlm.nih.gov/pubmed/24495517
pubs.begin-page 5
pubs.issue 1
pubs.organisational-group Duke
pubs.organisational-group Staff
pubs.publication-status Published online
pubs.volume 5


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