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<p>The primary goal of this thesis is to explore the capabilities of MOOSE (Multiphysics</p><p>Object
Oriented Simulation Environment) and LAMMPS (Large-scale Atomic/Molecular</p><p>Massively
Parallel Simulator) and their potential to be coupled in order to simulate</p><p>multiphase
flow in a Hele-Shaw cell. After formulating the Darcy-Richards multi-</p><p>phase
flow equations for a finite element method application, I synthesized the nec-</p><p>essary
particle-particle interactions from existing literature and implemented them</p><p>in
LAMMPS. In addition, I created a parallelized C++ program to calculate the</p><p>particle
packing field through the heavy employ of OpenMP. With the conclusion</p><p>of extensive
testing suites for both LAMMPS and MOOSE, I developed a python</p><p>program which
was used to mesh LAMMPS and MOOSE by acting as a translation</p><p>and book-keeping
program. While the coupling scheme appears to function properly</p><p>in test cases,
it fails to capture the full impact of the particles on the fluid system and</p><p>thus
allows for penetration of the invading fluid into regions which ought to remain</p><p>unsaturated.</p>
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