Browsing by Subject "Adsorption"

Now showing 1 - 7 of 7
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    Computational Study of Low-friction Quasicrystalline Coatings via Simulations of Thin Film Growth of Hydrocarbons and Rare Gases
    (2008-04-25) Setyawan, Wahyu
    Quasicrystalline compounds (QC) have been shown to have lower friction compared to other structures of the same constituents. The abscence of structural interlocking when two QC surfaces slide against one another yields the low friction. To use QC as low-friction coatings in combustion engines where hydrocarbon-based oil lubricant is commonly used, knowledge of how a film of lubricant forms on the coating is required. Any adsorbed films having non-quasicrystalline structure will reduce the self-lubricity of the coatings. In this manuscript, we report the results of simulations on thin films growth of selected hydrocarbons and rare gases on a decagonal Al$_{73}$Ni$_{10}$Co$_{17}$ quasicrystal (d-AlNiCo). Grand canonical Monte Carlo method is used to perform the simulations. We develop a set of classical interatomic many-body potentials which are based on the embedded-atom method to study the adsorption processes for hydrocarbons. Methane, propane, hexane, octane, and benzene are simulated and show complete wetting and layered films. Methane monolayer forms a pentagonal order commensurate with the d-AlNiCo. Propane forms disordered monolayer. Hexane and octane adsorb in a close-packed manner consistent with their bulk structure. The results of hexane and octane are expected to represent those of longer alkanes which constitute typical lubricants. Benzene monolayer has pentagonal order at low temperatures which transforms into triangular lattice at high temperatures. The effects of size mismatch and relative strength of the competing interactions (adsorbate-substrate and between adsorbates) on the film growth and structure are systematically studied using rare gases with Lennard-Jones pair potentials. It is found that the relative strength of the interactions determines the growth mode, while the structure of the film is affected mostly by the size mismatch between adsorbate and substrate's characteristic length. On d-AlNiCo, xenon monolayer undergoes a first-order structural transition from quasiperiodic pentagonal to periodic triangular. Smaller gases such as Ne, Ar, Kr do not show such transition. A simple rule is proposed to predict the existence of the transition which will be useful in the search of the appropriate quasicrystalline coatings for certain oil lubricants. Another part of this thesis is the calculation of phase diagram of Fe-Mo-C system under pressure for studying the effects of Mo on the thermodynamics of Fe:Mo nanoparticles as catalysts for growing single-walled carbon nanotubes (SWCNTs). Adding an appropriate amount of Mo to Fe particles avoids the formation of stable binary Fe$_3$C carbide that can terminate SWCNTs growth. Eventhough the formation of ternary carbides in Fe-Mo-C system might also reduce the activity of the catalyst, there are regions in the Fe:Mo which contain enough free Fe and excess carbon to yield nanotubes. Furthermore, the ternary carbides become stable at a smaller size of particle as compared to Fe$_3$C indicating that Fe:Mo particles can be used to grow smaller SWCNTs.
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    Functional elastic hydrogel as recyclable membrane for the adsorption and degradation of methylene blue.
    (PloS one, 2014-01) Bao, Song; Wu, Dongbei; Wang, Qigang; Su, Teng
    Developing the application of high-strength hydrogels has gained much attention in the fields of medical, pharmacy, and pollutant removal due to their versatility and stimulus-responsive properties. In this presentation, a high-strength freestanding elastic hydrogel membrane was constructed by clay nanosheets, N, N-dimethylacrylamide and 2-acrylamide-2-methylpropanesulfonic acid for adsorption of methylene blue and heavy metal ions. The maximum values of elongation and Young's modulus for 0.5% AMPSNa hydrogel were 1901% and 949.4 kPa, respectively, much higher than those of traditional hydrogels. The adsorptions were confirmed to follow pseudo-second kinetic equation and Langmuir isotherm model fits the data well. The maximum adsorption capacity of hydrogel towards methylene blue was 434.8 mg g(-1). The hydrogel also exhibited higher separation selectivity to Pb(2+) than Cu(2+). The methylene blue adsorbed onto the hydrogel membrane can be photocatalytically degraded by Fenton agent and the hydrogel membrane could be recycled at least five times without obvious loss in mechanical properties. In conclusion, this presentation demonstrates a convenient strategy to prepare tough and elastic clay nanocomposite hydrogel, which can not only be applied as recyclable membrane for the photocatalytic degradation of organic dye, but also for the recovery of valuables.
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    Long-term transformation and fate of manufactured ag nanoparticles in a simulated large scale freshwater emergent wetland.
    (Environ Sci Technol, 2012-07-03) Lowry, GV; Espinasse, BP; Badireddy, AR; Richardson, CJ; Reinsch, BC; Bryant, LD; Bone, AJ; Deonarine, A; Chae, S; Therezien, M; Colman, BP; Hsu Kim, H; Bernhardt, ES; Matson, CW; Wiesner, MR
    Transformations and long-term fate of engineered nanomaterials must be measured in realistic complex natural systems to accurately assess the risks that they may pose. Here, we determine the long-term behavior of poly(vinylpyrrolidone)-coated silver nanoparticles (AgNPs) in freshwater mesocosms simulating an emergent wetland environment. AgNPs were either applied to the water column or to the terrestrial soils. The distribution of silver among water, solids, and biota, and Ag speciation in soils and sediment was determined 18 months after dosing. Most (70 wt %) of the added Ag resided in the soils and sediments, and largely remained in the compartment in which they were dosed. However, some movement between soil and sediment was observed. Movement of AgNPs from terrestrial soils to sediments was more facile than from sediments to soils, suggesting that erosion and runoff is a potential pathway for AgNPs to enter waterways. The AgNPs in terrestrial soils were transformed to Ag(2)S (~52%), whereas AgNPs in the subaquatic sediment were present as Ag(2)S (55%) and Ag-sulfhydryl compounds (27%). Despite significant sulfidation of the AgNPs, a fraction of the added Ag resided in the terrestrial plant biomass (~3 wt % for the terrestrially dosed mesocosm), and relatively high body burdens of Ag (0.5-3.3 μg Ag/g wet weight) were found in mosquito fish and chironomids in both mesocosms. Thus, Ag from the NPs remained bioavailable even after partial sulfidation and when water column total Ag concentrations are low (<0.002 mg/L).
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    Membrane binding of plasmid DNA and endocytic pathways are involved in electrotransfection of mammalian cells.
    (PLoS One, 2011) Wu, Mina; Yuan, Fan
    Electric field mediated gene delivery or electrotransfection is a widely used method in various studies ranging from basic cell biology research to clinical gene therapy. Yet, mechanisms of electrotransfection are still controversial. To this end, we investigated the dependence of electrotransfection efficiency (eTE) on binding of plasmid DNA (pDNA) to plasma membrane and how treatment of cells with three endocytic inhibitors (chlorpromazine, genistein, dynasore) or silencing of dynamin expression with specific, small interfering RNA (siRNA) would affect the eTE. Our data demonstrated that the presence of divalent cations (Ca(2+) and Mg(2+)) in electrotransfection buffer enhanced pDNA adsorption to cell membrane and consequently, this enhanced adsorption led to an increase in eTE, up to a certain threshold concentration for each cation. Trypsin treatment of cells at 10 min post electrotransfection stripped off membrane-bound pDNA and resulted in a significant reduction in eTE, indicating that the time period for complete cellular uptake of pDNA (between 10 and 40 min) far exceeded the lifetime of electric field-induced transient pores (∼10 msec) in the cell membrane. Furthermore, treatment of cells with the siRNA and all three pharmacological inhibitors yielded substantial and statistically significant reductions in the eTE. These findings suggest that electrotransfection depends on two mechanisms: (i) binding of pDNA to cell membrane and (ii) endocytosis of membrane-bound pDNA.
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    Protein purification: adsorption chromatography on controlled pore glass with the use of chaotropic buffers.
    (Science (New York, N.Y.), 1976-01) Bock, HG; Skene, P; Fleischer, S; Cassidy, P; Harshman, S
    Chromatography on controlled pore glass in combination with chaotropic buffers makes possible, in a single step, protein purifications of several hundredfold. The new emphasis is on highly selective controllable adsorption. The method is useful for the purification and concentration of proteins from large volumes of complex media and for the purification of proteins that are poorly soluble or tend to aggregate in aqueous solution D-(-)-Beta-Hydroxybutyrate dehydrogenase, a mitochondrial membrane-bound protein, several soluble proteins, and staphylococcal alpha toxin, which can be purified directly from large volumes of culture medium, are used to illustrate the method.
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    Synthesis and Grafting To of Biomimetic Bottlebrush Polymers
    (2020) Navarro, Luis Alexander

    Specifically-adsorbed bottlebrush coatings are found in nature as brush-like glycoproteins that decorate biointerfaces and provide anti-fouling, lubrication, or wear-protection. These molecules contain a surface-adhesive headgroup to anchor macromolecules to a target surface and a bottlebrush polymer that endows the surface with a beneficial property, like antifouling. These glycoproteins can be effectively mimicked using protein-bottlebrush hybrids, but many challenges still exist to robustly produce such polymers. Furthermore, the use of glycoprotein-like bottlebrush coatings is limited by the current lack of understanding of their adsorption behavior and surface conformation. In this work, I first develop a modular synthesis to facilitate the production of protein-brush hybrids. I successfully made a range of protein-brush hybrids baring elastin-like polypeptides (ELP) as model proteins by using copper-catalyzed azide-alkyne cycloaddition and newly discovered diazotransfer reagents. I demonstrated the effectiveness of this synthetic path at each step through careful characterization with 1H-NMR, FTIR, GPC, and diagnostic test reactions on SDS-PAGE. In the second half of this work, I determine the relationships between the dimensions of end-adsorbing bottlebrush polymers and their adsorption behavior. Specifically, I examine the adsorption behavior of PEG-based, biotinylated bottlebrushes with different backbone and bristle lengths to streptavidin model surfaces in PBS. By using QCM, LSPR, and AFM, I learned how bottlebrush dimensions impact their adsorption kinetics, surface conformation, mechanical properties, and anti-fouling properties. Our bottlebrushes qualitatively mirror the adsorption behavior of linear polymers and exhibit three kinetic regimes of adsorption: (I) a transport-limited regime, (II) a pause, and (III) a penetration-limited regime. Furthermore, bristle length more dramatically affects brush properties than backbone length. Generally, larger bottlebrush dimensions lead to reduced molar adsorption, retarded kinetics, weaker anti-fouling, and softer brush coatings. Longer bristles also lead to less mass adsorption, while the opposite trend is observed for increasing backbone length. In summary, these findings aid the rational design of new bottlebrush coatings by elucidating how their dimensions impact adsorption, surface conformation, and the properties of the final coating.

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    Translating antibody-binding peptides into peptoid ligands with improved affinity and stability.
    (Journal of chromatography. A, 2019-09) Bordelon, Tee; Bobay, Benjamin; Murphy, Andrew; Reese, Hannah; Shanahan, Calvin; Odeh, Fuad; Broussard, Amanda; Kormos, Chad; Menegatti, Stefano
    A great number of protein-binding peptides are known and utilized as drugs, diagnostic reagents, and affinity ligands. Recently, however, peptide mimetics have been proposed as valuable alternative to peptides by virtue of their excellent biorecognition activity and higher biochemical stability. This poses the need to develop a strategy for translating known protein-binding peptides into peptoid analogues with comparable or better affinity. This work proposes a route for translation utilizing the IgG-binding peptide HWRGWV as reference sequence. An ensemble of peptoid analogues of HWRGWV were produced by adjusting the number and sequence arrangement of residues containing functional groups that resemble both natural and non-natural amino acids. The variants were initially screened via IgG binding tests in non-competitive mode to select candidate ligands. A set of selected peptoids were studied in silico by docking onto putative binding sites identified on the crystal structures of human IgG1, IgG2, IgG3, and IgG4 subclasses, returning values of predicted binding energy that aligned well with the binding data. Selected peptoids PL-16 and PL-22 were further characterized by binding isotherm analysis to determine maximum capacity (Qmax ˜ 48-57 mg of IgG per mL of adsorbent) and binding strength on solid phase (KD ˜ 5.4-7.8 10-7 M). Adsorbents PL-16-Workbeads and PL-22-Workbeads were used for purifying human IgG from a cell culture supernatant added with bovine serum, affording high values of IgG recovery (up to 85%) and purity (up to 98%) under optimized binding and elution conditions. Both peptoid ligands also proved to be stable against proteolytic enzymes and strong alkaline agents. Collectively, these studies form a method guiding the design of peptoid variants of cognate peptide ligands, and help addressing the challenges that, despite the structural similarity, the peptide-to-peptoid translation presents.