Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs.
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Only a small proportion of the mouse genome is transcribed into mature messenger RNA transcripts. There is an international collaborative effort to identify all full-length mRNA transcripts from the mouse, and to ensure that each is represented in a physical collection of clones. Here we report the manual annotation of 60,770 full-length mouse complementary DNA sequences. These are clustered into 33,409 'transcriptional units', contributing 90.1% of a newly established mouse transcriptome database. Of these transcriptional units, 4,258 are new protein-coding and 11,665 are new non-coding messages, indicating that non-coding RNA is a major component of the transcriptome. 41% of all transcriptional units showed evidence of alternative splicing. In protein-coding transcripts, 79% of splice variations altered the protein product. Whole-transcriptome analyses resulted in the identification of 2,431 sense-antisense pairs. The present work, completely supported by physical clones, provides the most comprehensive survey of a mammalian transcriptome so far, and is a valuable resource for functional genomics.
Amino Acid Motifs
Expressed Sequence Tags
Physical Chromosome Mapping
Protein Structure, Tertiary
Transcription Initiation Site
Published Version (Please cite this version)10.1038/nature01266
Publication InfoAdachi, J; Aizawa, K; Arakawa, T; Baldarelli, R; Batalov, S; Beisel, KW; ... Zimmer, A (2002). Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature, 420(6915). pp. 563-573. 10.1038/nature01266. Retrieved from https://hdl.handle.net/10161/11223.
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Robert Machemer, M.D. Professor of Ophthalmology
Scott W. Cousins, M.D. is currently the Robert Machemer, M.D. Professor of Ophthalmology and Immunology, Vice Chair for Research, and Director of the Duke Center for Macular Diseases at Duke Eye Center. As Vice Chair, he oversees all basic science research as well as the Ophthalmology Site-Based Research Group, which administrates clinical research for Duke Eye Center. Dr. Cousins is also Medical Director of Hospital-Based Imaging and Procedures for Duke Eye Center. Dr. Cousi
Adjunct Professor in the Dept. of Neurobiology
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