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  • Uncommitted State Revolving Funds 

    Hansen, Katy; Sawhney, Govind; Warren, Simon; Doyle, Martin (2022-03-21)
    States and the federal government invest in water, wastewater, and stormwater infrastructure by providing subsidized loans and other financial assistance through State Revolving Fund (SRF) programs. The funds are capitalized ...
  • Unmasking the immune microecology of ductal carcinoma in situ with deep learning. 

    Narayanan, Priya Lakshmi; Raza, Shan E Ahmed; Hall, Allison H; Marks, Jeffrey R; King, Lorraine; West, Robert B; Hernandez, Lucia; ... (13 authors) (NPJ breast cancer, 2021-03)
    Despite increasing evidence supporting the clinical relevance of tumour infiltrating lymphocytes (TILs) in invasive breast cancer, TIL spatial variability within ductal carcinoma in situ (DCIS) samples and its association ...
  • Improving Rural Livelihoods, Energy Access, and Resilience Where It’s Needed Most: The Case for Solar Mini-Grid Irrigation in Ethiopia 

    Ingram, Matthew; Phillips, Jonathan; Dufera, Hizkyas; Hizikias, Liuel; Jeuland, Marc; Lovedale, James (2022-07-18)
    Ethiopia’s levels of agricultural productivity and energy access are among the lowest in the world. Now Ethiopia is moving forward with the new Distributed Renewable Energy-Agriculture Modalities (DREAM) project to test ...
  • A Menu of State Actions to Promote Forest Carbon Sequestration and Storage 

    Lohman, Adam; Mason, Sara; Olander, Lydia (2022-05-27)
    Across the U.S., states are developing policies and programs to help promote forest-based natural climate solutions. This effort is bolstered by a growth in forest carbon programs that aim to make entry into the voluntary ...
  • Intimität. Eine nützliche kategorie transnationaler analyse 

    Wilson, A (Feministische Studien, 2014-05-01)
  • Invited Remarks on The Twilight of Cutting 

    Wilson, Ara (Somatosphere: Science, Medicine, and Anthropology (online), 2019)
    Invited remarks on Saida Hodžić, The Twilight of Cutting: African Activism and Life after NGOs.

  • Desiring infrastructure 

    Wilson, A (Dialogues in Human Geography, 2022-01-01)
    Infrastructure has been an object of political action in its form as public good. Kai Bosworth's article, ‘What is “affective infrastructure,”’ views political action as a result of infrastructure, that is, the kind of social ...
  • The 2017 Bioinformatics Open Source Conference (BOSC). 

    Harris, Nomi L; Cock, Peter JA; Chapman, Brad; Fields, Christopher J; Hokamp, Karsten; Lapp, Hilmar; Munoz-Torres, Monica; ... (9 authors) (F1000Research, 2017-01)
    The Bioinformatics Open Source Conference (BOSC) is a meeting organized by the Open Bioinformatics Foundation (OBF), a non-profit group dedicated to promoting the practice and philosophy of Open Source software development ...
  • The Chado Natural Diversity module: a new generic database schema for large-scale phenotyping and genotyping data. 

    Jung, Sook; Menda, Naama; Redmond, Seth; Buels, Robert M; Friesen, Maren; Bendana, Yuri; Sanderson, Lacey-Anne; ... (15 authors) (Database : the journal of biological databases and curation, 2011-01)
    Linking phenotypic with genotypic diversity has become a major requirement for basic and applied genome-centric biological research. To meet this need, a comprehensive database backend for efficiently storing, querying and ...
  • Meeting Report: BioSharing at ISMB 2010. 

    Field, Dawn; Sansone, Susanna; Delong, Edward F; Sterk, Peter; Friedberg, Iddo; Gaudet, Pascale; Lewis, Susanna; ... (24 authors) (Standards in genomic sciences, 2010-12)
    This report summarizes the proceedings of the one day BioSharing meeting held at the Intelligent Systems for Molecular Biology (ISMB) 2010 conference in Boston, MA, USA This inaugural BioSharing event was hosted by the Genomic ...
  • The DBCLS BioHackathon: standardization and interoperability for bioinformatics web services and workflows 

    Katayama, Toshiaki; Arakawa, Kazuharu; Nakao, Mitsuteru; Ono, Keiichiro; Aoki-Kinoshita, Kiyoko F; Yamamoto, Yasunori; Yamaguchi, Atsuko; ... (57 authors) (J. Biomed. Semantics, 2010-08)
    ABSTRACT: Web services have become a key technology for bioinformatics, since life science databases are globally decentralized and the exponential increase in the amount of available data demands for efficient systems without ...
  • The teleost anatomy ontology: anatomical representation for the genomics age. 

    Dahdul, Wasila M; Lundberg, John G; Midford, Peter E; Balhoff, James P; Lapp, Hilmar; Vision, Todd J; Haendel, Melissa A; ... (9 authors) (Systematic biology, 2010-07)
    The rich knowledge of morphological variation among organisms reported in the systematic literature has remained in free-text format, impractical for use in large-scale synthetic phylogenetic work. This noncomputable format ...
  • NeXML: rich, extensible, and verifiable representation of comparative data and metadata. 

    Vos, Rutger A; Balhoff, James P; Caravas, Jason A; Holder, Mark T; Lapp, Hilmar; Maddison, Wayne P; Midford, Peter E; ... (11 authors) (Systematic biology, 2012-07)
    In scientific research, integration and synthesis require a common understanding of where data come from, how much they can be trusted, and what they may be used for. To make such an understanding computer-accessible requires ...
  • Annotation of phenotypic diversity: decoupling data curation and ontology curation using Phenex. 

    Balhoff, James P; Dahdul, Wasila M; Dececchi, T Alexander; Lapp, Hilmar; Mabee, Paula M; Vision, Todd J (Journal of biomedical semantics, 2014-01)
    <h4>Background</h4>Phenex ( is a desktop application for semantically annotating the phenotypic character matrix datasets common in evolutionary biology. Since its initial publication, we have ...
  • Moving the mountain: analysis of the effort required to transform comparative anatomy into computable anatomy. 

    Dahdul, Wasila; Dececchi, T Alexander; Ibrahim, Nizar; Lapp, Hilmar; Mabee, Paula (Database : the journal of biological databases and curation, 2015-01)
    The diverse phenotypes of living organisms have been described for centuries, and though they may be digitized, they are not readily available in a computable form. Using over 100 morphological studies, the Phenoscape project ...
  • Phenoscape: Identifying Candidate Genes for Evolutionary Phenotypes. 

    Edmunds, Richard C; Su, Baofeng; Balhoff, James P; Eames, B Frank; Dahdul, Wasila M; Lapp, Hilmar; Lundberg, John G; ... (11 authors) (Molecular biology and evolution, 2016-01)
    Phenotypes resulting from mutations in genetic model organisms can help reveal candidate genes for evolutionarily important phenotypic changes in related taxa. Although testing candidate gene hypotheses experimentally in ...
  • Annotation of phenotypes using ontologies: a gold standard for the training and evaluation of natural language processing systems. 

    Dahdul, Wasila; Manda, Prashanti; Cui, Hong; Balhoff, James P; Dececchi, T Alexander; Ibrahim, Nizar; Lapp, Hilmar; ... (9 authors) (Database : the journal of biological databases and curation, 2018-01)
    Natural language descriptions of organismal phenotypes, a principal object of study in biology, are abundant in the biological literature. Expressing these phenotypes as logical statements using ontologies would ...
  • A Logical Model of Homology for Comparative Biology. 

    Mabee, Paula M; Balhoff, James P; Dahdul, Wasila M; Lapp, Hilmar; Mungall, Christopher J; Vision, Todd J (Systematic biology, 2020-03)
    There is a growing body of research on the evolution of anatomy in a wide variety of organisms. Discoveries in this field could be greatly accelerated by computational methods and resources that enable these findings to ...
  • Assessing Bayesian Phylogenetic Information Content of Morphological Data Using Knowledge From Anatomy Ontologies. 

    Porto, Diego S; Dahdul, Wasila M; Lapp, Hilmar; Balhoff, James P; Vision, Todd J; Mabee, Paula M; Uyeda, Josef (Systematic biology, 2022-10)
    Morphology remains a primary source of phylogenetic information for many groups of organisms, and the only one for most fossil taxa. Organismal anatomy is not a collection of randomly assembled and independent "parts", but ...

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