Classification of crystallization outcomes using deep convolutional neural networks.

Abstract

The Machine Recognition of Crystallization Outcomes (MARCO) initiative has assembled roughly half a million annotated images of macromolecular crystallization experiments from various sources and setups. Here, state-of-the-art machine learning algorithms are trained and tested on different parts of this data set. We find that more than 94% of the test images can be correctly labeled, irrespective of their experimental origin. Because crystal recognition is key to high-density screening and the systematic analysis of crystallization experiments, this approach opens the door to both industrial and fundamental research applications.

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Citation

Published Version (Please cite this version)

10.1371/journal.pone.0198883

Publication Info

Bruno, Andrew E, Patrick Charbonneau, Janet Newman, Edward H Snell, David R So, Vincent Vanhoucke, Christopher J Watkins, Shawn Williams, et al. (2018). Classification of crystallization outcomes using deep convolutional neural networks. PloS one, 13(6). p. e0198883. 10.1371/journal.pone.0198883 Retrieved from https://hdl.handle.net/10161/17392.

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Scholars@Duke

Charbonneau

Patrick Charbonneau

Professor of Chemistry

Professor Charbonneau studies soft matter. His work combines theory and simulation to understand the glass problem, protein crystallization, microphase formation, and colloidal assembly in external fields.


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